Gene Pnap_1556 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_1556 
Symbol 
ID4688873 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp1643429 
End bp1643968 
Gene Length540 bp 
Protein Length179 aa 
Translation table11 
GC content59% 
IMG OID639834559 
Producttripartite ATP-independent periplasmic transporter DctQ 
Protein accessionYP_981791 
Protein GI121604462 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3090] TRAP-type C4-dicarboxylate transport system, small permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0707122 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTAAAA AGTTGATCGA TGGTTATTGC CAGCTCATCA GCTACCTGAT TGCCGCAGCC 
CTGGCGGTGA TGGTCGTGCT GGTGTTCGGC AACGTGTTCA TGCGCTATGC CTTCGACTCG
GGCTTCATCC TGTCCGAAGA GTTGTCCCGC TGGCTGTTTG TCTGGCTGAC CTTCCTGGGC
GCGATCGTGG CGGTGCGCGA CAACGGCCAC CTGGGCACCG ACATGCTGGT GGGACGCCTG
GGGCCATTGG GCAAGAAAGT CTGCATGGGC CTGTCGCTGG TGCTGATGCT GTTTTGCCTG
TGGCTGCTGT TCAAGGGCTC CTACGACCAG ACGGTCATCA ACTGGGAAAC GACCAGCGCG
GTGATGGAAG TCTCGATGAG CTGGTTCTAT GCCTCGGGCA TGGTGTTTTC CGTGCTGAGC
GCGCCGATTT TGCTGGGCAA CCTGTGGCGC CTGCTGAGCG GCCAGATCGA CGACGAGCAC
CTGCTCTTGA TGCAGGAATC CGAAGACGCT CCCCACGGCG ATGCCGGCAA ATCCCACTAA
 
Protein sequence
MIKKLIDGYC QLISYLIAAA LAVMVVLVFG NVFMRYAFDS GFILSEELSR WLFVWLTFLG 
AIVAVRDNGH LGTDMLVGRL GPLGKKVCMG LSLVLMLFCL WLLFKGSYDQ TVINWETTSA
VMEVSMSWFY ASGMVFSVLS APILLGNLWR LLSGQIDDEH LLLMQESEDA PHGDAGKSH