| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1555 |
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| Symbol | |
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| ID | 4688800 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 1642422 |
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| End bp | 1643249 |
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| Gene Length | 828 bp |
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| Protein Length | 275 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 639834558 |
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| Product | shikimate 5-dehydrogenase |
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| Protein accession | YP_981790 |
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| Protein GI | 121604461 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.297158 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGATC GCTATGCCGT CATCGGCAAC CCCATTCATC AGAGCAAATC GCCCCTGATC
CACGGCATGT ATGCGCAAGC CACCGGCCAG GACATCGACT ACACCACCAT CGAAGGCCCG
CCGGGCGGAT TCGCCGGCGC GGTCGATGCC TTCCGCGCCG CCGGCGGCCG GGGCCTGAAC
ATCACCGCGC CGTTCAAGCT CGACGCCTTT GCCTACGCCA CCGAGCGCTC GGAACGCGCC
CAGCTCGCGG GCGCGGCCAA TGCCATGAAG TTCGACGGCG AGCGCGTGCT GGCCGAGAAC
TTCGACGGCG TCGGCCTGGT GCGCGACGTG GTGCATAACC TGAACACGCC GCTCAAGGGA
AAACGCGTGC TGCTGCTGGG CGCGGGCGGT GCCGCCCGGG GCGCGTTGCT GCCCTTCCTG
GAGCAGCAGC CCGCCGAACT GGTGATTGCC AATCGCAGCC TGGACAAGGC GCTTGAACTT
GCCCGCATCG GCGCTGCTTC GGGCGCCGGT GTCGTGCGCG GCTGCGCTTA CCAGGATCTG
GCGGGGCAGA CCTTCGACGT GGTGTTCAAC GCCACCTCGG CCAGTTTGCG CGCCGAACTG
CCGCCGGTGC CGGCCAGCGT GTTCGCGCCC GGCTGCCTGG CCTATGAACT GGCTTACGGC
AAGGGCCTGA CGCCTTTCCT GCGCCTGGCG CAAAACGCCG GCGTCCGGCA ACTGGCCGAC
GGTGTGGGCA TGCTGGCCGA ACAGGCTGCT GAAGCCTTTG AATGGTGGCG CGGCGTGCGG
CCCGACACCC GCGCGGTGAT TGAAAAACTG ACCATTCCGC TGGTTTAA
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| Protein sequence | MTDRYAVIGN PIHQSKSPLI HGMYAQATGQ DIDYTTIEGP PGGFAGAVDA FRAAGGRGLN
ITAPFKLDAF AYATERSERA QLAGAANAMK FDGERVLAEN FDGVGLVRDV VHNLNTPLKG
KRVLLLGAGG AARGALLPFL EQQPAELVIA NRSLDKALEL ARIGAASGAG VVRGCAYQDL
AGQTFDVVFN ATSASLRAEL PPVPASVFAP GCLAYELAYG KGLTPFLRLA QNAGVRQLAD
GVGMLAEQAA EAFEWWRGVR PDTRAVIEKL TIPLV
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