| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1503 |
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| Symbol | |
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| ID | 4689519 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 1591595 |
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| End bp | 1593397 |
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| Gene Length | 1803 bp |
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| Protein Length | 600 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 639834506 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_981738 |
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| Protein GI | 121604409 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGAATTTT TGACTCACAA CTTTGCCCCG ATCATGTTCG CGGGCCTCAT CGTCTTTTTG
CTGATGGGCT TTCCGGTGGC GTTCAGCCTG GGCGCCTGCG GCATTTTCTT CGGCTTCGTC
GGCATTGAAC TCGGCCTGCT GCCCGAAGCG CTGATCCAGG CGCTGCCGCT GCGCCTGTTC
GGCATCATGC AGAACGACAC GCTGCTGGCG ATTCCCTTCT TTACCTTGAT GGGGCTGATC
CTGGAGCGCA GCGGCATGGC CGAGGACTTG CTCGACACGA TTGGCCAGCT GTTCGGCCCG
GTTCGCGGCG GCCTGGCGCT GGCGGTGATC TTTGTCGGCG CGCTGCTGGC GGCCACGACC
GGCGTGGTGG CGGCGTCGGT GATCTCGATG GGCCTGATCT CGCTGCCCAT CATGCTGCGC
TACGGCTACG ACCGGCGCAT TGCCTCGGGC GTGATTGCCG CGTCCGGCAC GCTAGCGCAG
ATCATTCCGC CGTCGCTGGT GCTGATCATC CTGGCCGACC AGCTGGGCCG CAGCGTCGGC
GACATGTACA AGGGCGCGTT TTTGCCGGGC TTCATGCTGA CGGGCATGTA CGCCGGCTAC
GTGATGCTGC TGGCCATCTT CAAACCCACA TGGGTGCCGG CGCTGCCGCT TGAGGCACGC
GTCTTTCGCG AACCCAGCGG CTCCAGCGGC ACGCCTTCGC TGCTGCTGCT GACCCTTGTC
TCGGCCGGCG CGGCCATCTT TTTCGGCCAG CACATTGCCG ACGTTCACAC CTGGTGGAGC
GGCCAACCGG TGACCACGGT GCCGAAAGAC GAAACCATCG TCGTGTCGCT GTGCGTGGGC
GTCATGCTGG CCTTCGTGAT GGCGGTCATC AACAAGGCGA CGCGCCTTGG CCTGCTGTCG
CGCATGGCCG AGCGCGTGAC CTTTGTGCTG ATTCCGCCGC TGCTGCTGAT CTTTCTGGTG
CTGGGAACCA TCTTTCTGGG CGTGGCCACG CCGACCGAGG GCGGCGCCAT GGGCGCGCTG
GGCGCACTGA TCATGGCGCT GGTGCGCGGC CGCCTGAGCC TGCCTTTGCT CAGGCAGGCG
CTCAACACGA CCACCAAGCT GTCGTGCTTC GTGGTGTTCA TCTTGATCGG ATCGACCATT
TTCAGCCTGG TGTTCCAGGG CATTGACGGC CCGCGCTGGG TCGAGCATTT GCTGACCAGC
CTGCCCGGCG GGCAGATCGG TTTTCTGATC GTGGTGAACA TCATGATCTT CTTCCTGGCC
TTTTTCCTGG ACTTCTTCGA GCTGTCCTTC ATCGTCGTGC CGCTGCTGGC GCCGGTGGCG
CAGAGCCTGG GCATCGACCT GATCTGGTTC GGGGTGCTGC TGGCGGTCAA CATGCAGACC
TCGTTCATGC ACCCGCCCTT CGGCTTTGCG CTGTTTTACC TGCGCAGCGT GGCGCCTACG
CTGCCCTATA CCGACCGGGT GACCAGGCAG CTGATCCAGC CGGTCACGAC CATGCAGATC
TATTGGGGCG CGGTGCCTTT CGTGCTGATG CAGATCATCA TGGTGGGCCT CATCATCGCC
TTCCCGGGCA TTGTGTCGGG CGAACTCGAC AAGCCCAAGG CGGTGGACAT GGAACAGATC
CGCCTGCAGA TGGAGGCCGA TGTCAACAAG TCGGAATCGG CGCAAGATGC CTACGGCGCC
GGCGCCCAGC CTGGCTCAGG CGCCGGCCTG ATGCCCGAGC CCGAAGCGAT CGAGCCGCCT
GCGGTCGATG ACAAAGACCT GTTCAAGCCT GCGGAAGGCG CGGCTCCGGA CGCGAAAAAA
TAG
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| Protein sequence | MEFLTHNFAP IMFAGLIVFL LMGFPVAFSL GACGIFFGFV GIELGLLPEA LIQALPLRLF
GIMQNDTLLA IPFFTLMGLI LERSGMAEDL LDTIGQLFGP VRGGLALAVI FVGALLAATT
GVVAASVISM GLISLPIMLR YGYDRRIASG VIAASGTLAQ IIPPSLVLII LADQLGRSVG
DMYKGAFLPG FMLTGMYAGY VMLLAIFKPT WVPALPLEAR VFREPSGSSG TPSLLLLTLV
SAGAAIFFGQ HIADVHTWWS GQPVTTVPKD ETIVVSLCVG VMLAFVMAVI NKATRLGLLS
RMAERVTFVL IPPLLLIFLV LGTIFLGVAT PTEGGAMGAL GALIMALVRG RLSLPLLRQA
LNTTTKLSCF VVFILIGSTI FSLVFQGIDG PRWVEHLLTS LPGGQIGFLI VVNIMIFFLA
FFLDFFELSF IVVPLLAPVA QSLGIDLIWF GVLLAVNMQT SFMHPPFGFA LFYLRSVAPT
LPYTDRVTRQ LIQPVTTMQI YWGAVPFVLM QIIMVGLIIA FPGIVSGELD KPKAVDMEQI
RLQMEADVNK SESAQDAYGA GAQPGSGAGL MPEPEAIEPP AVDDKDLFKP AEGAAPDAKK
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