| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1478 |
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| Symbol | |
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| ID | 4689922 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 1566249 |
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| End bp | 1569074 |
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| Gene Length | 2826 bp |
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| Protein Length | 941 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 639834481 |
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| Product | DNA polymerase I |
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| Protein accession | YP_981713 |
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| Protein GI | 121604384 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
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| TIGRFAM ID | [TIGR00593] DNA polymerase I
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.495398 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTCCTG ATAAAAAAAC CTTGCTGCTG GTCGATGGCT CCAGCTACCT GTACCGCGCC
TTTCATGCCA TGCCCGACCT GCGCGTCACC CCCGGCGACC CGCAAAGCCC GGCCACCGGC
GCGATTCGCG GCATGGTCAA CATGATGCAA AAACTGCGCA AGGATGTGCG GGCCGACTAT
GCGGTCTGCG TGTTCGACGC CAAGGGGCCG ACCTTTCGCG ATGCGCTGTA TCCCGAGTAC
AAGGCCCAGC GCTCGGCCAT GCCCGACGAT CTGCGCAGCC AGGTCGAGCC GATTCATGAA
GTGGTGCAAC TGCTGGGCTG GAAAGTGCTC GCCGTGCCCG GCGTCGAGGC CGACGACGTG
ATCGGCACGC TGGCCTGCAT GGCCTCAAGC CAGCAAATCG AAGTCATCAT CTCCAGCGGC
GACAAGGACT TGAGCCAGCT GGTCGATGAA CACATCACCG TCATCGACAC CATGAATGAC
CGTCGCCGCG ACCTGGCTGG TGTTGAAGCG GAATTCGGCG TGCCGCCGCG CCTGATGGTC
GATTACCAGA CGCTGGTCGG CGACACTGTT GACAACGTGC CGGGCGTGCC CAAGGTGGGC
CCGAAAACCG CCGTGAAGTG GCTGCTCGAA TATGGCTCGC TCGATGCGCT GGTGGCCCGG
GCTGGCGAGA TCAAGGGCAT CGTCGGCGAG AACCTGCGCA AGTCGCTGGA CTGGCTGCCC
AAGGGCCGCG AGCTGCTGAC GATCAAGAAA GACTGCGAAC TGGCCGACTA CATCGACGGC
TTGCCTGCTA TGGATTCAAT AGCTATCGGC GCACAGCAGA CGAGCGCATT GAGGACTTTT
TATCTGAAAT ATGGCTTCAA GGGACTGGTC GGCCAGATTG ATGCCGAAAA TACGCCGCCC
GAACTTGTCG GCGGCCCTGA ACGCCGCAAG CCCCGCGCGC CGACGGCCTC GCCAGATTCG
CCCGGCCTGT TCGACGACGA CGAGCCTTCG CTGCTTGACA CGCCGCTGGC CGGGCGCGCC
AGCAACCTGC TGTATGAAAC TATCCTGACC TGGGAGGCGC TGGACCGCTG GCTGGCCAAA
ATCGAAGCGG CCGAACTGGT GGCAGTCGAT ACCGAAACCA CGTCGCTCGA TGAAATGCGC
GCGCAGATTG TCGGCGTGAG CTTCAGCGTG ACGCCGGGCG AGGCCGCCTA CATTCCGCTG
ACGCACGACT ACCCTAGCGC CCCCGAGCAG TTGCCGCTGG ATGAGGTGCT GGCCCGGCTC
AAGCCCTGGC TTGAAAACCC GGCCAGACCG AAGCTGGGCC AGAACATCAA ATACGACCGC
CATGTGTTCG CCAACCACGG CATCGAGGTG CAGGGCTACG CGCACGACAC CATGCTGCAA
AGCTATGTGC TCGAAGTGAC CAAGCCGCAC GGGCTGGCCA GCCTGGCCGA GCGGCATGTG
GGGCGCAGCG GCATCAACTA TGAAGACCTG TGCGGCAAGG GCGTACACCA GATCAAGTTC
AACCAGGTCG ATATTGCCAG GGCAGCCGAA TACTCGTGCG AAGACTCCGA CCAGACGCTT
GACGTGCACC GGGTGCTGTG GCCGCAACTG CAGGCCAATG AAAAGCTGCT GTTTATCTAT
CAGCTGGAAA TGCAGAGCAG CGAAACGCTC TACCGCATCG AGCGCAACGG CGTGCTGATC
GACGCGCCCA TGCTGGCCAG GCAAAGCCAT GAACTGGGCC AGCGCCTGCT GCAGCTGGAG
ACCGAGGCGT ACGAGATGGC CGGCCAGCCC TTCAACCTGG GCAGCCCCAA GCAATTGGCC
GAAATATTCT TTGACAAGCT GGGCATGAAG GTGGTCAAGA AAACGCCCAG CGGCGCGCGC
AGCACCGACG AGGATGTGCT TGAAAAGCTG GCCGAAGATC ACCCGCTGCC GGCCAAGCTG
CTGGAACACC GCTCGCTTTC CAAGCTCAAG GGCACCTACA CCGACAAGCT GGCCCAACTG
GCCAACCCGC GCACCGGCCG CGTCCACACC CACTATGCGC AGGCCGTCGC CGTGACCGGC
CGGCTGTCGA GCAACGACCC CAACCTGCAG AACATCCCGG TCAAGACCGC CGAGGGCCGG
CGCGTGCGCG AAGCCTTCGT GGCGCCTGCC GGCAGCGTGA TCGCCAGCGC CGACTATTCG
CAGATCGAGC TGCGCATCAT GGCGCACATC AGCGGCGATG AATCGTTGCT GCATGCCTTC
ACCGCCGGGC TGGACGTGCA CCGCGCCACG GCAGCCGAAG TGTTCGGCGT CGCGCTGGAG
CAGGTCAGCA GCGAACAGCG CCGCTACGCC AAGGTCATCA ACTTCGGCCT GATCTACGGC
ATGAGCAGTT TTGGCCTGGC GAAGAACCTG GGGATTGAAA CCAAGGCGGC GGCCGCCTAC
ATCGACCGCT ATTTCCAGCG CTATCCCGGC GTGAAGCACT ACATGGATTC GACCCGCCAA
CTGGCCAAGG AGCAGGGCTA CGTCGAGACC GTCTTCGGCC GGCGCCTGCT GTTGCCCGAA
ATCAACTCGC CCAACGGCCC GCGCCGCGCC GGCGCCGAGC GCGCCGCCAT CAACGCGCCC
ATGCAGGGCA CCGCCGCCGA CCTGATCAAG CTCAGCATGG TGAAGGTGCA GCAAGTACTG
GATGCCGAAA AGCGCGGCAC GAAAATGATC ATGCAGGTGC ATGACGAACT GGTGTTTGAA
GTCCCCGAGG CCGAGGTGGA ATGGGTGCGC ACCGAGATTC CGCGCCTCAT GGCCGGCGTG
GCCGAGCTCA AGGTGCCGCT GCTGGCCGAG ATCGGCTTTG GGCCGAACTG GGAACAGGCG
CACTGA
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| Protein sequence | MSPDKKTLLL VDGSSYLYRA FHAMPDLRVT PGDPQSPATG AIRGMVNMMQ KLRKDVRADY
AVCVFDAKGP TFRDALYPEY KAQRSAMPDD LRSQVEPIHE VVQLLGWKVL AVPGVEADDV
IGTLACMASS QQIEVIISSG DKDLSQLVDE HITVIDTMND RRRDLAGVEA EFGVPPRLMV
DYQTLVGDTV DNVPGVPKVG PKTAVKWLLE YGSLDALVAR AGEIKGIVGE NLRKSLDWLP
KGRELLTIKK DCELADYIDG LPAMDSIAIG AQQTSALRTF YLKYGFKGLV GQIDAENTPP
ELVGGPERRK PRAPTASPDS PGLFDDDEPS LLDTPLAGRA SNLLYETILT WEALDRWLAK
IEAAELVAVD TETTSLDEMR AQIVGVSFSV TPGEAAYIPL THDYPSAPEQ LPLDEVLARL
KPWLENPARP KLGQNIKYDR HVFANHGIEV QGYAHDTMLQ SYVLEVTKPH GLASLAERHV
GRSGINYEDL CGKGVHQIKF NQVDIARAAE YSCEDSDQTL DVHRVLWPQL QANEKLLFIY
QLEMQSSETL YRIERNGVLI DAPMLARQSH ELGQRLLQLE TEAYEMAGQP FNLGSPKQLA
EIFFDKLGMK VVKKTPSGAR STDEDVLEKL AEDHPLPAKL LEHRSLSKLK GTYTDKLAQL
ANPRTGRVHT HYAQAVAVTG RLSSNDPNLQ NIPVKTAEGR RVREAFVAPA GSVIASADYS
QIELRIMAHI SGDESLLHAF TAGLDVHRAT AAEVFGVALE QVSSEQRRYA KVINFGLIYG
MSSFGLAKNL GIETKAAAAY IDRYFQRYPG VKHYMDSTRQ LAKEQGYVET VFGRRLLLPE
INSPNGPRRA GAERAAINAP MQGTAADLIK LSMVKVQQVL DAEKRGTKMI MQVHDELVFE
VPEAEVEWVR TEIPRLMAGV AELKVPLLAE IGFGPNWEQA H
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