| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1471 |
|---|
| Symbol | |
|---|
| ID | 4688779 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 1557514 |
|---|
| End bp | 1559463 |
|---|
| Gene Length | 1950 bp |
|---|
| Protein Length | 649 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639834474 |
|---|
| Product | DEAD/DEAH box helicase domain-containing protein |
|---|
| Protein accession | YP_981706 |
|---|
| Protein GI | 121604377 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.25269 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGACT CTTTTGAGAC TCGCGGCGAC TTTGCGCCTG AAACCCTTGA CACCATTTCC
GACCTGGAAA TCCACGTGAT TCCTGACTTC TCTTCCGACG AGCCTGTTGC CGTGGCAACC
TCGCTGGAAG CCGTTGTCGC CGAGCCTAAC GGCTTTGTGA AGCTGGGCCT GGCCAAGGAA
CTGCTGCAAG CCGTCGCCGA CATGGGTTTC ACCCAGCCAA CCTCGGTGCA GATGGCCACC
ATCCCCAAGG CCATGCAAGC CCTGGACGCC GACCCGAAAG CGCCAAAATT CACCGATCTG
CTGGTTTCCA GCCAGACCGG CAGCGGCAAG ACCGCCGCCT TCCTGCTGCC CGTGCTGCAC
ACCCTGCTGA AACAGCAGGA AGAAGCCGAG CGCAATGAAC GTGCCGAATT TGAACGCCTG
AGCGCCGAGG CCGTCGCCCG TGGCGAAGCG CCCTTGAAAA AACCCAAGCG CAAAGACCCG
ACCAACATGC GCAACTTCAA GGCCGCCACC CCCGGCGCCC TGATCCTGTG CCCGACCCGC
GAACTGGCCC AGCAAGTCTG CGCTGACGCC ATCGACCTGG TTCGCCATTG CCGTGGCCTG
CGCGTTGCCA ACGTCGTTGG CGGCATTCCT TACCAGCTGC AAATTGCCAA GCTGCAAAAT
GCCGACCTCG TCGTGGCCAC GCCCGGCCGT CTGCTCGATT TGCAGCGCAG CATGCAGATC
AAGCTCGACC AGGTTCAGTT CCTGGTGGTT GACGAAGCCG ACCGCATGCT CGACCTCGGC
TTTGCCGACG ATCTGACCGA AGTCAACCAG CTCACCATCG AGCGCAAGCA GACCATGATG
TTCAGCGCCA CGTTCGCGCC GCGCATCATG CAACTGGCGA CCCGCGTCAT GCGTCAGCCG
CAGCGCGTCG AGATCGACTC GCCGCACGAA AAGCATGCCT CGATCACCCA GTCGCTGCTG
TGGGCCGACA ACATGACCCA CAAGCGCAAG CTGCTGGACC ACTGGCTGCG CGACACCACC
ATCAACCAGG CGATTGTTTT TGCCTGCACG CAGGTGGAAT GCGACGGCCT GGCCAATGAC
CTGGTGCAGG AAGGCTTCAG CGCCGTGGCG CTGCATGGCG CGCTGGGCCA GGGCCTGCGC
AACCGCCGCC TGATGGCTTT CCGTGACGGC CGCGTGCAGA TTCTGGTGGC TACCGACGTG
GCTGCCCGTG GTCTGGACGT TCCGACCATC ACCCACGTCA TCAACTACGG CCTGCCGATG
AAAGCCGAAG ATTACGTTCA CCGCATTGGC CGCACCGGCC GTGCCGGCCG CGAAGGCCAG
GCGATCACGA TTGCCGAGTT CCGCGACCGC CGCAAGATCC AGGACATCGA GCACTACACG
CAGCAAAACC TCAAGGCCAG CGTGATTGCC GGTCTGGAGC CGCAGCAGCG TTTTGCCCCG
ACCTCCGAGC GCCCACGCGG CAACTTCGGC GGCGACCGCA ATGACCGTGG CCCGCGCAGC
TTCGGCGGCG GTGGCGGCGA CCGTGGCGGT TTCGGCGGCC GCAAGCCGGC CGGTGGCGGC
TTCGGCGGCG GCAATGCAGG CAGCTTCGGC GGCAATGCAG GCGGCGGCTT CGGTGGCAAC
CGTGACGACC GTGGTGGTTT CGGCGGAAAC CGTGATGCCG GCGCCTTCCA GGGCCGTCCT
CCAGCGCCTC AAGGCAACAA TTACGCTGAC CGGTCCGGTT TCAATGACCG CAATGCCCGT
CGCCCGGATG ACCGTGGTTT CGGTGGCGGC AACGCCGCGT TTGCACCGCG TGAAGACCGC
AACTTTGGCG GCGGCAACGA AGGTTTTGCG CCCCGTGGCG ATTTTGCAGA CCGCAAGCCC
GCTTTCGCCC GCCCAGCCGG CAAGGTGTTC GTGCCCCGCG ATGCGGCCAA AAAGCCGGGC
GGCAAGTTCA CCAAGCCTTT CCGCGATTGA
|
|---|
| Protein sequence | MTDSFETRGD FAPETLDTIS DLEIHVIPDF SSDEPVAVAT SLEAVVAEPN GFVKLGLAKE
LLQAVADMGF TQPTSVQMAT IPKAMQALDA DPKAPKFTDL LVSSQTGSGK TAAFLLPVLH
TLLKQQEEAE RNERAEFERL SAEAVARGEA PLKKPKRKDP TNMRNFKAAT PGALILCPTR
ELAQQVCADA IDLVRHCRGL RVANVVGGIP YQLQIAKLQN ADLVVATPGR LLDLQRSMQI
KLDQVQFLVV DEADRMLDLG FADDLTEVNQ LTIERKQTMM FSATFAPRIM QLATRVMRQP
QRVEIDSPHE KHASITQSLL WADNMTHKRK LLDHWLRDTT INQAIVFACT QVECDGLAND
LVQEGFSAVA LHGALGQGLR NRRLMAFRDG RVQILVATDV AARGLDVPTI THVINYGLPM
KAEDYVHRIG RTGRAGREGQ AITIAEFRDR RKIQDIEHYT QQNLKASVIA GLEPQQRFAP
TSERPRGNFG GDRNDRGPRS FGGGGGDRGG FGGRKPAGGG FGGGNAGSFG GNAGGGFGGN
RDDRGGFGGN RDAGAFQGRP PAPQGNNYAD RSGFNDRNAR RPDDRGFGGG NAAFAPREDR
NFGGGNEGFA PRGDFADRKP AFARPAGKVF VPRDAAKKPG GKFTKPFRD
|
|---|
| |