| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1453 |
|---|
| Symbol | |
|---|
| ID | 4687018 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 1543580 |
|---|
| End bp | 1544938 |
|---|
| Gene Length | 1359 bp |
|---|
| Protein Length | 452 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639834456 |
|---|
| Product | major facilitator superfamily transporter |
|---|
| Protein accession | YP_981688 |
|---|
| Protein GI | 121604359 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2211] Na+/melibiose symporter and related transporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.722152 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGCC GGGCCGCTTT CAGGGCAAAT ACCGTAGCGC GTAGCGCGGA GCTTGTGCAA
ATGAGCGCAC CAGCGGCAGT TTCGGTGCGC CAGGGGCTGA CCTACGGGCT GCTCGGACTG
CCGCTGGCTT TTGTGGCCCT GCCGCTGTAT GTATTGCTGC CCAACCACTA TGCGCGGGAA
TTCGGCATGC CGCTGGCCAC GCTGGGCACT GTACTGCTCA CGGCGCGACT GTTCGACGCT
GCCATCGACC CGCTGCTCGG GCGCCTGAGC GACCGGCTGT TTGCCCGGTC GCTGCGTGCC
GTGCTGGCGG CCGGTGCGGT GTCTGCGCTG GTGCTGGCCG TGGGGCTGGC CGGGCTGTTT
TTCCCGGCGG TGGTGGGGTC GGGCGCGCTC ATTGCCTGGG CAGCGGGTTT TTTGCTGATC
GCCTACACCG CCTACAGCCA GCTCAGCATT GCCCACCAGT CCTGGGGCGC CCGACTCGGC
GGCAATGAGC TGCAGCGCGG GCGCATCGTG GCCTGGCGTG AGGGCTGCGG CCTTTTGGGC
GTCGTGCTGG CCTCGGTGCT GCCTGCGCTG CTGGGGCTGC CGGTGATGCT GGGCGTGTTC
GCTGCCACAC TGGTGCTGGG CTGGCTGGCC TGGACCAGGG CGCCTGCGCC AGTGCAGCTT
GCGCGCCTGG ATCGTTACGC GCCGGGGGCC AGCCTGTGGC GGCCATGGCG CGGCGCGGCC
TTCAGGCGCC TGCTGGCCGT CTTCATGCTC AACGGCATCG CCAGTGCCGT GCCGGCCACG
CTGGTGCTTT TTTTCATTCA GGACCGGCTG CAGGTTGCGC CTGCGCGGGA GCCGCTGTTC
CTGGGCGCCT ATTTCCTTTG TGCGGCGCTG TCGATTCCGC TGTGGCTGCG GGCGGTGACG
CGCTGGGGGC TGGCGCGCAC CTGGCTTGCG GGCATGCTGC TGGCGATTGT CGTGTTCGCC
GGCGTCGCGG GCCTGGGCGA GGGCGATGCG GCAGCCTTTT TGCTGGTGTG CGCGCTTTCC
GGCGCCGCGC TGGGCACCGA CCTGGCCTTG CCCGGCGCGC TGCTGGCCGG CGTGATTGCC
CAGCAGGGCG ACAGTGGCCA GCATGAAGGC GCCTATTTTG GCTGGTGGAA CTTTGCCACC
AAGCTCAACC TGGCGCTGGC CGCCGGGCTG GCGCTGCCTT TGCTCGGCGC GCTGGGCTAC
ACCCCCGGCA CGCGCAGCCC CGAAGGTCTG CAAACCCTGG GTCTGGCCTA CGCCGTGTTG
CCCTGCGGAC TCAAGCTGCT GGCGGCGGCT GCGCTGTATT TCCTCATCAT CCGTTGCCCG
CAACCAGGGC GCACTTTTAT TCCGGAAGGC TCACCATGA
|
|---|
| Protein sequence | MSRRAAFRAN TVARSAELVQ MSAPAAVSVR QGLTYGLLGL PLAFVALPLY VLLPNHYARE
FGMPLATLGT VLLTARLFDA AIDPLLGRLS DRLFARSLRA VLAAGAVSAL VLAVGLAGLF
FPAVVGSGAL IAWAAGFLLI AYTAYSQLSI AHQSWGARLG GNELQRGRIV AWREGCGLLG
VVLASVLPAL LGLPVMLGVF AATLVLGWLA WTRAPAPVQL ARLDRYAPGA SLWRPWRGAA
FRRLLAVFML NGIASAVPAT LVLFFIQDRL QVAPAREPLF LGAYFLCAAL SIPLWLRAVT
RWGLARTWLA GMLLAIVVFA GVAGLGEGDA AAFLLVCALS GAALGTDLAL PGALLAGVIA
QQGDSGQHEG AYFGWWNFAT KLNLALAAGL ALPLLGALGY TPGTRSPEGL QTLGLAYAVL
PCGLKLLAAA ALYFLIIRCP QPGRTFIPEG SP
|
|---|
| |