| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1420 |
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| Symbol | |
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| ID | 4687008 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 1507927 |
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| End bp | 1510038 |
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| Gene Length | 2112 bp |
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| Protein Length | 703 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 639834422 |
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| Product | polynucleotide phosphorylase/polyadenylase |
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| Protein accession | YP_981655 |
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| Protein GI | 121604326 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
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| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0845346 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCATTT TCAATAAAGT CACCAAATCA TTCCAATGGG GCCAGCACAA GGTCACGATG
GAAACCGGCG AAATGGCGCG CCAGGCTGGC GGCGCCGTGC TGCTTGACAT GGACGGCACC
GTCGTGCTGG CCACCGTGGT TGCCAAGAGC GACGCCAAGC CCGGCCAGGA TTTCTTTCCC
CTGACGGTCG ATTACCTTGA AAAGACCTAC GCCGCAGGCC GCATTCCCGG CAGCTTCTTC
AAGCGCGAAG GCCGCCCCAG CGAGTTTGAA ACGCTGACGT CGCGCCTGAT CGACCGCCCG
ATTCGCCCGC TGTTTCCTGA AGGCTTCTTC AATGAAGTGC AGGTCGTGAT CCATGTGCTG
TCGCTGAACC CGGAAGTCGA AGGCGACATT CCCGCGCTGA TCGCTTCGAG CGCCGCGCTG
TCAATTTCCG GCATTCCGTT CAACGGCCCG ATTGGCGCCG CCCGCGTGGC CTACATCAAT
GGCGAGTACG TGCTGAACCC CGGCAAGACC CAGTTGCAGA ATTCCACCAT GGACCTGGTG
GTGGCCGGTA CCGAAGCCGC CGTGCTGATG GTCGAGTCCG AAGCCAAGCA ACTGTCTGAA
GAAATCATGC TCGGCGCCAT TGTGTTTGGC CACGAGCAGG GCAACATCGC CATCAATGCG
ATTCACGAAC TGGTTCGCGA TGCCGGCAAG CCGGTGTGGG ACTGGAAAGC GCCCGCCAAG
GACGAGGTGC TGATCGCCAA GGTGGTTGCG CTGGCCGAGG AAAAGCTGGT TGCCGCCTAC
CAGATCCGCA ACAAGCAGGC CCGCACGCAC GCCACGCGCC AAGTGACCAC CTGGACCAAG
ATGGGCCTGA AAGCCGAAGG CGTTGAATTC GACGGCGTTG CCGTTGAAGG CATGCTGTTC
GACATCGAAG CCAAGATTGT CCGCAGCCAG ATTCTGGCCG GCGATCCGCG CATCGACGGC
CGCGACACGC GCACCGTCCG GCCGATTGAA ATCCGCAACA GCGTGCTGCC CCGCACCCAC
GGTTCGGCCC TGTTCACGCG TGGCGAAACC CAGGCGCTGG TCGTGACCAC GCTGGGCACC
GAGCGCGACG CGCAGCGCAT CGATGCATTG AGCGGCGACT ACGAAGACCG CTTCATGCTG
CACTACAACA TGCCTCCGTT CGCCACCGGC GAAACCGGCC GCGTGGGTAG CCCGAAACGC
CGCGAGATTG GTCATGGGCG GCTTGCGAAG CGCGCGCTGA TCGCCGTTCT GCCGAGCAAG
GAAGAATTCC CGTACACCAT GCGCGTGGTC AGCGAGATCA CCGAATCCAA TGGTTCGTCG
TCCATGGCTT CGGTCTGCGG CGGCTGCCTG TCGCTGATGG ATGCTGGCGT TCCCATGAAG
GCCCATGTGG CCGGTATCGC CATGGGCCTG ATCAAGGAAG ACAACCGTTT TGCCGTGCTG
ACCGACATCC TGGGCGATGA AGATCATCTG GGCGACATGG ACTTCAAGGT CGCCGGCACC
ACGTTCGGCA TCACCGCGCT GCAGATGGAC ATCAAGATCC AGGGCATCAC CAAGGAAATC
ATGCAGGTCG CGCTGGCCCA GGCCAAGGAG GCGCGCATGC ACATTCTGGG CAAGATGCAG
GAAGCCATGG GCCAGGCCAA TGCGGAAGTC TCTGACTTCG CGCCGCGCCT GTATGTCATG
AAGATCAACC CCGAGAAGAT CCGCGACGTG ATCGGCAAGG GCGGCGCCGT CATCCGCGCG
CTGACCGAAG AGACCGGCAC GCAGATCAAC ATCGAGGAAG ACGGCACCAT CACCATCGCC
TCGAACGACA GCGCCAAGGC CGACGAAGCC AAGCGCCGCA TCGCCGAAAT CACTGCCGAA
GTCGAAATCG GCAAGGTCTA TGAAGGCGCT ATCACCAAGA TCCTCGATTT CGGTGCGCTG
GTCAATCTCA TGCCCGGCAA GGACGGTTTG CTGCACATCA GCCAGATCGC CCACGAGCGT
GTCGAGAAAG TCACCGACTA CCTGAGCGAA GGCCAGATCA TCAAGGTCAA GGTTCTGGAA
ACCGACGAAA AAGGCCGCGT CAAGCTGTCA ATGAAGGCAT TGCTGGACCG TCCTTCCCAG
CATCAGGGCT GA
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| Protein sequence | MSIFNKVTKS FQWGQHKVTM ETGEMARQAG GAVLLDMDGT VVLATVVAKS DAKPGQDFFP
LTVDYLEKTY AAGRIPGSFF KREGRPSEFE TLTSRLIDRP IRPLFPEGFF NEVQVVIHVL
SLNPEVEGDI PALIASSAAL SISGIPFNGP IGAARVAYIN GEYVLNPGKT QLQNSTMDLV
VAGTEAAVLM VESEAKQLSE EIMLGAIVFG HEQGNIAINA IHELVRDAGK PVWDWKAPAK
DEVLIAKVVA LAEEKLVAAY QIRNKQARTH ATRQVTTWTK MGLKAEGVEF DGVAVEGMLF
DIEAKIVRSQ ILAGDPRIDG RDTRTVRPIE IRNSVLPRTH GSALFTRGET QALVVTTLGT
ERDAQRIDAL SGDYEDRFML HYNMPPFATG ETGRVGSPKR REIGHGRLAK RALIAVLPSK
EEFPYTMRVV SEITESNGSS SMASVCGGCL SLMDAGVPMK AHVAGIAMGL IKEDNRFAVL
TDILGDEDHL GDMDFKVAGT TFGITALQMD IKIQGITKEI MQVALAQAKE ARMHILGKMQ
EAMGQANAEV SDFAPRLYVM KINPEKIRDV IGKGGAVIRA LTEETGTQIN IEEDGTITIA
SNDSAKADEA KRRIAEITAE VEIGKVYEGA ITKILDFGAL VNLMPGKDGL LHISQIAHER
VEKVTDYLSE GQIIKVKVLE TDEKGRVKLS MKALLDRPSQ HQG
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