| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1375 |
|---|
| Symbol | |
|---|
| ID | 4686596 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 1464624 |
|---|
| End bp | 1465274 |
|---|
| Gene Length | 651 bp |
|---|
| Protein Length | 216 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639834378 |
|---|
| Product | putative transmembrane protein |
|---|
| Protein accession | YP_981611 |
|---|
| Protein GI | 121604282 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2834] Outer membrane lipoprotein-sorting protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.423523 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.00143441 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACGCTTT TTCCTGAACT GCCCCAACTT CCGGCCTTTG CCACAGGCTT GCCGCGCCGC
GCCGCGCAAG GCCTCGCTTC AGCCCTGGCG GCATTGACGA TAGGCCTGGC ACTGGCTGCG
TTCAGCCCGG CAGCCTTCGC GGCCTGGGAC TTGCAGCAGC TGATGGACTC GCTGGCGCAG
AACAAGTCCG GCCATGCCAG CTTTGTCGAA AAAAAATACA TCGCCGTTCT CGACAGGCCC
GTCGAATCCT CCGGCGAGCT GCTCTACACC GCGCCGGACG GGCTGGAGAA ACGCACGCTC
AAGCCCAAGC CCGAATCCAT GGTTGTGAAC GGCGATGAAC TGCTCATCGA ACGCGGACGC
CAAAAGCACC GCCTCCAGCT GCAGGCCTAC CCGGAACTGG CGGCCTTCAT TGACAGCATT
CGCGGCACGC TGGCCGGCGA CCGCAAGGCG CTGGAACGCA GCTACCGGCT GAGCCTGGAG
GGCAGTGCCG AACGCTGGAG CCTGCAACTG CTGCCGCTGG ATGAAAAAAT GCAGGCCGTC
ATCCAGCGCA TCACGATTGC CGGCATGCGC GATCAGGTGC GCAGCATTGA AATCACCCAG
GCCGATGGCG ACCGCTCCGT GATGAACATC GACAAGCTGG CGACGCCGTG A
|
|---|
| Protein sequence | MTLFPELPQL PAFATGLPRR AAQGLASALA ALTIGLALAA FSPAAFAAWD LQQLMDSLAQ
NKSGHASFVE KKYIAVLDRP VESSGELLYT APDGLEKRTL KPKPESMVVN GDELLIERGR
QKHRLQLQAY PELAAFIDSI RGTLAGDRKA LERSYRLSLE GSAERWSLQL LPLDEKMQAV
IQRITIAGMR DQVRSIEITQ ADGDRSVMNI DKLATP
|
|---|
| |