Gene Pnap_1343 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_1343 
Symbol 
ID4686374 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp1432806 
End bp1434041 
Gene Length1236 bp 
Protein Length411 aa 
Translation table11 
GC content67% 
IMG OID639834346 
Productgeranylgeranyl reductase 
Protein accessionYP_981579 
Protein GI121604250 
COG category[C] Energy production and conversion 
COG ID[COG0644] Dehydrogenases (flavoproteins) 
TIGRFAM ID[TIGR02032] geranylgeranyl reductase family 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.263408 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACTCCA GCATTGAATT ACTCCCCAAG ACGTGCGATG TCCTGGTGAT CGGCGCCGGC 
CCGTCCGGCA GCGCGGCCGC CTTCACCCTG GCCAAGACCG GGCTGGACGT GGTGCTGATC
GACCAGCATG CCTTTCCCCG CGACAAGATC TGCGGCGACG GCTTGATCCC GGACGCGCAC
AAGGCCCTTG ACCGGCTCGG CGTGCTTGAC GAGGTCATGC GCCAGGCCCA TTCATCCGAA
TTTTTGAGCT GCATCAGCCC GCGCGGCGGG CGCATCGATG TGGCCGGAAC ACTGGCCGTG
CTGCCGCGCA AGCAGCTGGA CGATATCGTC TGCAAGGCGG CCGTGGCGGC GGGTGCGCGC
ATGTTCGCGC CAGTGCGTTT TACCGCGCCG ATCGAGGAAA ACGGCAAGGT GACAGGCGCG
CGCCTGGCCC AGTCAGGCCA TGAGTGCGAA CTGCGGGCAA CCTGGGTCAT CCTGGCGACG
GGCGCAGTCC CGCAGGCGCT GATGGCCGCC GGCATGGCGG AGCGGCACAC GCCCAGCGCC
ATCGCGATGC GCTGCTACAT CAAGAACGAC GCGATGGCGT CCAGAATCGA CAAGCTGGAA
GTTATCTGGC ACAAGGCGCT GGCGCCCGGC TACGGATGGA TTTTCCCGTG CGGCAATGGC
GTTTTCAATG TGGGCGTCGG CATCCTGGCC GCGCCCGATG ACCCGGCGGG CAAGCGCGAT
ACATCGCAGG GCAAGGCAGG CACCGCCAAT TTGCGCCAGA TGTTCGAAGC CCTCGGCACC
CTGTCGGAGC CGGCCAGGGA ACTGATGGCG GGCGGCACGC GCCTGAGTCC GCTCAAGGGC
GCGCCGCTGC GCTGCAGCCT GCAGGGGGCG CAACTGTCGC GGCCGGGCCT GCTGGTGACC
GGCGAGGCCG CTGGCAGCAC CTACGCTTTT TCTGGCGAAG GCATCGGCAA GGCGCTGGAA
ACCGGCATCC TGGCGGCAGA GGCGATCTTG CAGGGCGAGG GCGAGGCGCA GGTGCGCGCC
CACTACCAAA GCCGGATTGA AGCGCTGCGG CCGCGCTTTG CGCTGTACGA GCGGGCCAAC
CTGGTCAACA AATATCCGTG GCTGGCCGAT TTGCTGATCT GGCGGGCACG CAAAAGCGCG
CGCCTGCAGC AGCGCCTGAG CGGGGTTCTG AACGAAACCA GCAATCCGGG CAGCCTGTTC
ACCGTCAAGG GCTTTGTCCG GCTGTTTACC GAATAA
 
Protein sequence
MNSSIELLPK TCDVLVIGAG PSGSAAAFTL AKTGLDVVLI DQHAFPRDKI CGDGLIPDAH 
KALDRLGVLD EVMRQAHSSE FLSCISPRGG RIDVAGTLAV LPRKQLDDIV CKAAVAAGAR
MFAPVRFTAP IEENGKVTGA RLAQSGHECE LRATWVILAT GAVPQALMAA GMAERHTPSA
IAMRCYIKND AMASRIDKLE VIWHKALAPG YGWIFPCGNG VFNVGVGILA APDDPAGKRD
TSQGKAGTAN LRQMFEALGT LSEPARELMA GGTRLSPLKG APLRCSLQGA QLSRPGLLVT
GEAAGSTYAF SGEGIGKALE TGILAAEAIL QGEGEAQVRA HYQSRIEALR PRFALYERAN
LVNKYPWLAD LLIWRARKSA RLQQRLSGVL NETSNPGSLF TVKGFVRLFT E