| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1220 |
|---|
| Symbol | |
|---|
| ID | 4688363 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 1309742 |
|---|
| End bp | 1310695 |
|---|
| Gene Length | 954 bp |
|---|
| Protein Length | 317 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639834223 |
|---|
| Product | histone deacetylase superfamily protein |
|---|
| Protein accession | YP_981456 |
|---|
| Protein GI | 121604127 |
|---|
| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.354736 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0941624 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAAAA CGGGTTATTT CACCCACACG GACTGCTGGA AGCATGAAAT GGGGCCGGGA
CATCCCGAGT GTCCCGAGCG GCTGGATGCG ATTGAAGACC AGCTTCTGGC GGCCGGCGTG
AAGGATGCGC TGGACCTGCA GGAGGCTCCG CTGGCCGCCA TCGGCGACAT CGAACTGGCG
CACGACCGCA TGCTGGTGGC GGCGATTCGC GGCCTGAGCG ACCAGCTGGC CGATGACATC
CGGGCCGGCG GTCCGGCCCA TGTCCAGATC GACCCCGACA CGGCATTGAA CGTCCACACC
TGGAACGCCG CCCTGCGCGC GGCAGGCGCG GTGATTGCGG CCACCGACGC CGTGATGGCC
GGCGAGATGG ACAACGCCTT TTGCGCCGTG CGCCCGCCGG GCCACCATGC CGAACGCAGC
AAGGCCATGG GTTTTTGCTT TTTCAACAAC ATTGCGATTG CCGCCAAATA CGCGCTGGAG
CGCCACGGCC TCAAGCGCGT GGCGATTGTG GACTTTGACG TGCACCACGG CAACGGCACC
GAAGACATCG TCCGGGGCGA TGAGCGCATC CTGATGGTGA GCTTTTTCCA GCACCCGCTG
TTTCCCTTCA GCGGCGCCGG CACGCAGGCC CCCAACATGG TGAACCTGCC GGTGCCGGCC
TACACCAAGG GCATGGAGGT GCGCGAGCTG ATCGACATGA TGTGGATGCC CCGGCTGGAA
GCCTTCAAGC CCGAGATGAT CTTCATCAGC GCCGGGTTTG ACGCCCACCG CGACGATGAC
CTGGGCCAGA TGAACCTGAA CGAAGCCGAT TACGCCTGGA TCACCGAGCG CATCAAAAAT
GTTGCCAAAC GCCACGCCAA GGGCCGGATC GTGTCCGCGC TTGAAGGCGG CTACAACCTC
GGCGCGCTGG GGCGCAGCGT TGAGGCGCAT ATCCGCGTGC TGGCTGATTT ATAG
|
|---|
| Protein sequence | MNKTGYFTHT DCWKHEMGPG HPECPERLDA IEDQLLAAGV KDALDLQEAP LAAIGDIELA
HDRMLVAAIR GLSDQLADDI RAGGPAHVQI DPDTALNVHT WNAALRAAGA VIAATDAVMA
GEMDNAFCAV RPPGHHAERS KAMGFCFFNN IAIAAKYALE RHGLKRVAIV DFDVHHGNGT
EDIVRGDERI LMVSFFQHPL FPFSGAGTQA PNMVNLPVPA YTKGMEVREL IDMMWMPRLE
AFKPEMIFIS AGFDAHRDDD LGQMNLNEAD YAWITERIKN VAKRHAKGRI VSALEGGYNL
GALGRSVEAH IRVLADL
|
|---|
| |