| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1036 |
|---|
| Symbol | |
|---|
| ID | 4686906 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 1097180 |
|---|
| End bp | 1098754 |
|---|
| Gene Length | 1575 bp |
|---|
| Protein Length | 524 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639834035 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_981274 |
|---|
| Protein GI | 121603945 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3845] ABC-type uncharacterized transport systems, ATPase components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0725845 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGCTT CACCGACCCC TAGCTCCCGC AGCGCCGCCG CGCCGCCCCG GCTGCAGCTT
TTCGGCATCA GCAAAAGCTA CCCCGGCGTG GTCGCCAACA GCGACATTGC GCTCGCCGTG
CTGCCCGGCC AGATTCACGC CGTGCTGGGT GAAAACGGCG CCGGCAAATC GACCCTGATG
AAAATCATCT ACGGCTCGGT CAAGCCCGAC GCGGGCAGCG TGTCCATCGA CGGCCAGCCG
GTGGTGGTGC GCAACCCGCA GGAGGCGAGG GCGCTGGGCA TCAGCATGGT GTTCCAGCAT
TTCAGCCTGT TCGACACGCT GACCGTCGCT GAAAACGTCT GGCTCGGGCT GGACAAGCAT
TTGACGCTGG CCGACGTGTC CCAGCGCATC CTGGAAACCA CCAAGGCCTA CGGCCTGCAG
CTCGACCCGA CGCGGCCGGT GCACACCTTG AGCGTCGGCG AGCGCCAGCG CGTCGAGATC
GTTCGCGCGC TGATGACCCA TCCGAAGCTG CTGATCCTGG ACGAACCGAC CTCGGTGCTG
ACGCCGCAGG CGGTCGAAAA CCTGTTCGTC ACGCTGCGCA CGCTGTCCAG CCAAGGCTGC
AGCATTCTGT ACATCAGCCA CAAGCTGCAC GAAATCCGTG CGCTGTGCAC CGCGTGCACC
GTGCTGCGCG CCGGCAAGGT GTCGGGCGAG TGCGACCCGC GCGAGGAATC GAACGCCTCG
CTCAGCCGCC TGATGATCGG CGCCGAGCCG CCCGCGCTGG AGCGCCGCGT GCTGAAGACC
GGCGACGTGG TGCTCGATGT GAAGCAGCTC GACCTGGCGA AAGAAGAGCA GTTCGGCGTC
GATTTGCACC AGGTGGCGCT GCAGGTGCGC GCGGGCGAGG TGGTCGGCAT TGCCGGCGTC
TCGGGCAACG GCCAGAAGGA GCTGCTGTAT GCGCTGTCGG GCGAGGACAC GCGCGCGGCC
GCCGGAGCCA TCACCGTCAA GGGCCAGGGC GTCGGCAAGA TGAGCCCGGC GCGGCGCCGC
CGTCTCGGCG TGCATTTCGT TCCCGAGGAA CGGCTGGGGC GCGGCGCGGT GCCCCTGCTG
CCGCTGGCGC GCAACCTGCT GCTCACGCGC AAGGACGCGG TGGGCGCGGG CGGCTGGCTC
AGCACCGCCA GGCTGCAGGC GCAGGCCCGG ATGATCATCG AGCGCTACAA GGTCAAGTGC
GGCGGGCCGC AGGCCGTCGC CAAGTCGCTG TCAGGCGGCA ACCTGCAAAA ATTCATCATG
GGCCGCGAGA TTGACGCCAG GCCGGCGCTG CTCATCGTCT CGCAGCCGAC CTGGGGCGTC
GATGTGGGCG CTTCCAGCCA GATTCGCGGC GAGCTGCTCA AGCTGGCGGG CGCGGGCGGC
GCGGTGCTGG TGGTCAGCGA AGAACTCGAC GAGCTGTTTG AAATCTGCGA CCGGCTGTAT
GTGATGGCCA AGGGCCAGTT GTCGCCTTCG CTGCCGCGCG CCGACGCCAC GGTCGAGAAG
GTCGGCTTGT GGATGAGCGG CCTGTGGGCG CCGGCCACCG CAGCAGACAA AGCAGGAGCG
CGGCATGAAG CTTGA
|
|---|
| Protein sequence | MTASPTPSSR SAAAPPRLQL FGISKSYPGV VANSDIALAV LPGQIHAVLG ENGAGKSTLM
KIIYGSVKPD AGSVSIDGQP VVVRNPQEAR ALGISMVFQH FSLFDTLTVA ENVWLGLDKH
LTLADVSQRI LETTKAYGLQ LDPTRPVHTL SVGERQRVEI VRALMTHPKL LILDEPTSVL
TPQAVENLFV TLRTLSSQGC SILYISHKLH EIRALCTACT VLRAGKVSGE CDPREESNAS
LSRLMIGAEP PALERRVLKT GDVVLDVKQL DLAKEEQFGV DLHQVALQVR AGEVVGIAGV
SGNGQKELLY ALSGEDTRAA AGAITVKGQG VGKMSPARRR RLGVHFVPEE RLGRGAVPLL
PLARNLLLTR KDAVGAGGWL STARLQAQAR MIIERYKVKC GGPQAVAKSL SGGNLQKFIM
GREIDARPAL LIVSQPTWGV DVGASSQIRG ELLKLAGAGG AVLVVSEELD ELFEICDRLY
VMAKGQLSPS LPRADATVEK VGLWMSGLWA PATAADKAGA RHEA
|
|---|
| |