Gene Pnap_1005 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_1005 
Symbol 
ID4686729 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp1057546 
End bp1060134 
Gene Length2589 bp 
Protein Length862 aa 
Translation table11 
GC content69% 
IMG OID639834004 
Productcyanophycin synthetase 
Protein accessionYP_981243 
Protein GI121603914 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0769] UDP-N-acetylmuramyl tripeptide synthase
[COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes 
TIGRFAM ID[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02068] cyanophycin synthetase 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.623044 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAGTTT CACGTATCCG GGCCCTGCGC GGCCCCAATC TCTGGAGCCG CCGCACGGCC 
CTTGAAGCCA TCGTCGCCTG CAGCCCCGCC GAATGCTCGG TGGACAACCT GGCCGGGTTC
GAGCCGCGCC TGCGGGCCTT GTTTCCAGGC ATCGGCGTCC TGCGCGAGAC CGGCCCCGCC
GGTCCGGTGT CGCTGGCGCA TGTGCTGGAA GCAGCCGCGC TGGAGCTGCA GGCCGCAGCT
GGCTGTCCGG TCACCTTCAG CCGCACCTCG GCCACGCTGG AGCCGGGCAC CTACCAGGTC
GTGGTCGAGT ACAGCGAAGA AGCGGTGGGC CGCCTGGCGT TTGAGCTGGC GCAGGCGCTG
GTGCATGCAG CCCTGCAGGA CGCGCCTTTT GAGCTGCAGG CCGCCATTGC CCGCCTGCGC
GACCTCGATG AAGACGAGCG CATGGGTCCG AGTACCGGCG CGATTGTCGA TGCCGCCGTG
GCGCGCGGCA TTCCCTACCG GCGCCTGACC AAGGGCAGCA TGGTGCAGTT TGGCTGGGGC
TCGCGCCAGC GCCGCATCCA GGCGGCCGAA CTCGACAGCA CCAGCGCCGT GGCCGAATCG
ATTGCGCAGG ACAAGGACCT GACCAAGAAG TTGCTGCGCG CCGCCGGCGT TCCGGTGCCG
CTGGGCCGTC CGGCCAGCGA CCCGGACGAC GCCTGGGCAG CGGCGCTGGA GGTCGGCCTG
CCGGTCGTGG TCAAGCCGCA GGACGGCAAC CAGGGCAAGG GCGTGACCGT CAACATCATG
ACGCGCGAGC AGCTTGACAG CGCCTGGCGC GCGGCCGCCG AACATGGCGA AGTCATGGTT
GAACGGTTTC TGCCGGGCTG CGACTTTCGC CTGCTGGTGG TCGGAGCCAA GCTGGTCGCC
GCTTCCCGGC GCGAGCCGCC GCAGGTCGTC GGCGACGGCG TGCACACGGT GCGCGAGCTG
GTCGAGATCG TCAACCAGGA CCCCCGGCGC GGCGAAGGCC ATGCCACGTC GCTGACCAAG
ATACGGTTTG ACGACATCGC TGTCGCCCGG CTCGATGCCC AGGGCTTGAG CCCCGCGTCG
GTTCCGGCCA AGGGCAAGCG CGTCATTTTG CGCAACAACG CCAACCTGAG CACCGGCGGC
ACCGCCACCG ACGTGACCGA CGAAGTGCAT CCGGCCATCG CCGCCCGCGC CGTGGCGGCC
GCGCAGATGA TCGGCCTGGA CATTTGCGGC GTCGATGTGG TGTGCGAAAG CATGCTGCGC
CCGCTGGAGG CGCAAAACGG CGGCGTGGTC GAGGTCAATG CCGCGCCCGG CCTGCGCATG
CACCTGTCGC CTTCCTACGG CAAGGGCCGC GCCGTCGGCG TCGCCATGAT TGACGAGCTT
TTCCCTGCCG GTGAAAACGG CCGCATTCCC GTGATTGCCG TCACCGGCAC CAACGGCAAG
ACCACCACCA CCCGGCTGAT CGCCCACCTG CTGGCCGCGC ACGGCCTGCG CACCGGCATG
ACGAATACCG ACGGCGTCTA TATCAACGGC CGGCAGACCG ACAGCGGCGA CTGCAGCGGC
CCGAAAAGCG CGCGCAACGT GCTGATGCAC CCGGACGTGG ACGCGGCGGT GTTCGAGGTC
GCGCGCGGCG GCGTGCTGCG CGAAGGCCTG GGCTTTGACC GCTGCGAAGT CGCCGTGGTG
ACCAACATCG GCAGCGGCGA CCACCTCGGG CTGAACTACA TCACCACGGT CGAAGACCTG
GCGGTGCTCA AACGCGTGAT CGTGCAGAAC GTCGCGCCCA CGGGTTACGC GGTGCTCAAT
GCGGCCGACG CCATCGTCAC CGAGATGGCC CAGGCCTGCC CCGGCAAGGT GATCTTTTTC
GGCGCCGACC GCCATCACCC GCTGATGGCC ACGCACCGCG CGCAGGGCAA GCGCACGGTG
TTTGTCGATG GGCCAATGCT GGTGGCCGCC GAAGGCTCGC GCGTCGAGCG CATCGCGCTG
TCGGGCATTC CGGTCACGCG GGCGGGAAGC ATCGGCTTTC AGGTCGAAAA CGTGATGGCG
GCCGTGGCGG CGGCCTGGGC CGTCAACGTC AGCTGGGACA CCATCAAGAG CGGCCTGGCC
AGCTTCGCCT GCGACACGCA CAACGCACCC GGCCGCTTCA ACGTGATGGA CTATGGCGGC
GCCACCGTGA TTGCCGACTA CGGCCACAAC CCCGACGCCA TGCTGGCGCT GGTCGCCGCC
GTCAATGCCA TGCCAGCGCA GCGCCGCAGC GTGGTCATCA GCGGCGCGGG CGACCGGCGC
GACAGCGACA TCACCAACCA GACGGTGATT CTGGGTGCCG CGTTCGACGA CGTGATCCTG
TACCAGGACG CTGCCCAGCG CGGCCGGGCC GATGGCGAAG TGATGGCGCT GCTGCGCGAA
GGCCTGAAAG GCGCCAGCCG CACGCAGCGG ATTGACGAGA TACGCGGCGA GTTCGTGGCC
ATCGACACGG CGCTGGCGCG CCTGCAGCCC GGCGACCTGT GCCTGGTCCT GGTCGATCAG
GTGCAGGAGG CGCTGGACCA CCTGGCGCTG CGCATCAGGG AAGCGCGGGA AAAGCTGATG
CCAGCCTGA
 
Protein sequence
MEVSRIRALR GPNLWSRRTA LEAIVACSPA ECSVDNLAGF EPRLRALFPG IGVLRETGPA 
GPVSLAHVLE AAALELQAAA GCPVTFSRTS ATLEPGTYQV VVEYSEEAVG RLAFELAQAL
VHAALQDAPF ELQAAIARLR DLDEDERMGP STGAIVDAAV ARGIPYRRLT KGSMVQFGWG
SRQRRIQAAE LDSTSAVAES IAQDKDLTKK LLRAAGVPVP LGRPASDPDD AWAAALEVGL
PVVVKPQDGN QGKGVTVNIM TREQLDSAWR AAAEHGEVMV ERFLPGCDFR LLVVGAKLVA
ASRREPPQVV GDGVHTVREL VEIVNQDPRR GEGHATSLTK IRFDDIAVAR LDAQGLSPAS
VPAKGKRVIL RNNANLSTGG TATDVTDEVH PAIAARAVAA AQMIGLDICG VDVVCESMLR
PLEAQNGGVV EVNAAPGLRM HLSPSYGKGR AVGVAMIDEL FPAGENGRIP VIAVTGTNGK
TTTTRLIAHL LAAHGLRTGM TNTDGVYING RQTDSGDCSG PKSARNVLMH PDVDAAVFEV
ARGGVLREGL GFDRCEVAVV TNIGSGDHLG LNYITTVEDL AVLKRVIVQN VAPTGYAVLN
AADAIVTEMA QACPGKVIFF GADRHHPLMA THRAQGKRTV FVDGPMLVAA EGSRVERIAL
SGIPVTRAGS IGFQVENVMA AVAAAWAVNV SWDTIKSGLA SFACDTHNAP GRFNVMDYGG
ATVIADYGHN PDAMLALVAA VNAMPAQRRS VVISGAGDRR DSDITNQTVI LGAAFDDVIL
YQDAAQRGRA DGEVMALLRE GLKGASRTQR IDEIRGEFVA IDTALARLQP GDLCLVLVDQ
VQEALDHLAL RIREAREKLM PA