| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1000 |
|---|
| Symbol | |
|---|
| ID | 4687616 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 1053779 |
|---|
| End bp | 1054657 |
|---|
| Gene Length | 879 bp |
|---|
| Protein Length | 292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 639833999 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_981238 |
|---|
| Protein GI | 121603909 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4674] Uncharacterized ABC-type transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR03411] urea ABC transporter, ATP-binding protein UrtD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCCCG ATCTGCTGGA GGAGGGCGCG CGCCGCGTTC AAGAGCACCA GGCGCTGGTG
GAGCGTCAAA ACAATACCGC CTCGGGCGGG CGCAACGCCA GCACCGGCCG CATCGCCACG
CCGGGCGAGG TCGATGTGAC GCACGGCCGC ATCCTGTACC TGCAGGATGT GAGCGTCAGC
TTCGACGGCT TCAAGGCCAT CAACAAGCTC AGCCTGGACA TTGCGCCGGG CGAGTTGCGC
TGCATCATCG GCCCGAACGG CGCGGGCAAG ACGACCATGA TGGACATCAT CACCGGCAAG
ACCCGGCCCG ACGAGGGCAC GGTGTTTTTC GGCAGCACGA TTGACCTGCT GCGCCACAAG
GAGGCCGACA TTGCGCAGCT CGGCATTGGC CGCAAGTTCC AGAAACCGAC GGTGTTCGAG
CAACTCACGG TGTTTGAAAA CCTGGAGTTG GCGCTGAAGA CCAACAAGGG CGTGAAGGCG
TCGATGTTCT TTCGGCTGGA CTCATTGCAG AGCGACCGGC TTGCCGAGAT TCTGGTGACG
ATTCATCTGG CCGACAGTGT CAACCGGCTG GCGGGCAACC TGAGCCATGG GCAAAAGCAG
TGGCTGGAAA TCGGCATGCT TTTGATGCAG GATCCGAAGC TGCTGTTGCT TGACGAGCCG
GTGGCGGGCA TGACGGATGA GGAAACGGCG CGCACGGCCG AGCTGTTTTT GACGCTCAAG
GGCAAGCATT CGCTGATGGT GGTCGAGCAT GACATGAGCT TTATCCGCAC GATTTCTGAA
ATCGTCACTG TCTTGTGCGA TGGGTCTGTC TTGGCGCAGG GGACGCTGGA CCAGGTGCAG
GCGGATGAGC GGGTGATTGA GGTGTATCTT GGTCGGTGA
|
|---|
| Protein sequence | MTPDLLEEGA RRVQEHQALV ERQNNTASGG RNASTGRIAT PGEVDVTHGR ILYLQDVSVS
FDGFKAINKL SLDIAPGELR CIIGPNGAGK TTMMDIITGK TRPDEGTVFF GSTIDLLRHK
EADIAQLGIG RKFQKPTVFE QLTVFENLEL ALKTNKGVKA SMFFRLDSLQ SDRLAEILVT
IHLADSVNRL AGNLSHGQKQ WLEIGMLLMQ DPKLLLLDEP VAGMTDEETA RTAELFLTLK
GKHSLMVVEH DMSFIRTISE IVTVLCDGSV LAQGTLDQVQ ADERVIEVYL GR
|
|---|
| |