Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_0978 |
Symbol | |
ID | 4688202 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | + |
Start bp | 1027200 |
End bp | 1030727 |
Gene Length | 3528 bp |
Protein Length | 1175 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 639833977 |
Product | integral membrane sensor hybrid histidine kinase |
Protein accession | YP_981216 |
Protein GI | 121603887 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACGCCG TCGCCACGCC TTCACCACCG CCGCCTCAAC CGGGCACGCC CACGGGCTCG CTGGATGAGC GCAGGGGCTC GGGCGCCGAA CCCGAGGTGG CGGTGCAGCG CATCATCAAG GTCAGGCGCG ACTACAACAG CTGGGTCGCC AGCGAAACGA TGGAAGACTA CGCGCTGCGC TTCACGCCGC AGCGCTTTCG CAAATGGTCG GAATGGCGCG TGGCCAACAC CGCGTTCGGC GCGGCCTCGT TCCTGATCCT GGAGGCGGTC GGGGCGACCT TGCTGGTGAA ATACGGCTTC ACCAATGCCT TCTGGGCCAT CATGGCCACG GGGCTGATCA TTTTCCTGGC CGGCCTGCCG ATCAGCATTT ATGCGGCGCG CTATGGCGTC GATATGGATT TGCTGACGCG CGGCGCGGGT TTTGGCTACA TCGGCTCGAC GCTGACCTCG CTGATCTATG CCTCGTTCAC CTTCATTTTC TTTGCGCTCG AAGCGGCGGT CATGGCCTAC GCGCTGGAGC TTGTCTTCGG CATACCGCCC AAATGGGGCT ACCTGATCTG CGCGCTGGTG GTGATTCCGC TGGTCACGCA CGGCGTTTCA ACCATCAGCC GCCTGCAGGT CTGGACGCAA GCCTTGTGGC TGGTCATGCT GGTCGTGCCT TTTGTGTATG TTTTCATGCT CGCTCCTGGT GCATTTTCAG GGGTCGTTCA GTATGGAGGC GAGAAGGGAG GCGGTGGTGA CTTCAATTTG CACCTGTTTG GTGCGGCATT GACGGTCGGC ATCGCATTGA TCACCCAGAT GGGTGAGCAG GCCGACTATT TGCGCTTCAT GCCGGTGCAG ACCAAGGCCA ATCGCTGGCG CTGGTGGGCC GGGGTGTTCA TCGGCGGGCC GGGCTGGGTG TTGCTGGGCG TGGTCAAGAT GCTGGGCGGC GCGCTGCTGG CCTACCTGGC GATTTCCAAC ATGGTGCCGC TGGACCGGGC CGTGGACCCG AACCAGATGT ACCTGGCCGC CTATGAATAT GTGTTTCCGA ATTACAGCTG GGCCGTGGGC GCCACGGCGC TGTTCGTCGT GGTGTCGCAG CTCAAGATCA ATGTGACCAA TGCCTATGCC GGCTCGCTGG CCTGGTCGAA CTTTTTCTCG CGCCTGACGC ACAGCCACCC AGGACGGGTG GTCTGGCTGG TGTTCAACAC CGCCATCGCC TTCATGCTGA TGGAGATGAA TGTGTTCCAG GCGCTCGGCG AGGTGCTGGG GCTGTACTCG AACATCGCGA TTGCCTGGGT CATGGCCGTG GTGGCGGACC TGGTCATCAA CAAGCCGCTG GGCCTGTCGC CGCCGGGCAT CGAGTTCAAG CGCGCCCATC TGTATGACAT CAACCCGGTC GGCGTGGGCG CCATGGCGCT GGCTTCGCTG CTGTCGATCA CGGCGCATCT GGGGCTGTAT GGCGAACTGG CACGGGCATT TTCTGCGGTG ATCGCCATGA CGACCGCGTT CGTGGCGGCG CCGCTGATTG CCTGGGCCAC GAAGGGGCGC TATTACATCG CGCGCCGCTC TGCTTCATCG GCCGCCGGGG GACTCCACAA GCGCCATGCC ACCCAGCACT GCGTGATTTG CGAACGCAGC TATGAAGGCC CCGACATGGC GCATTGCCCG GCTTACCAGG GGCCGATCTG CTCGCTGTGC TGCACGCTGG ACGCGCGTTG CGGCGATTTG TGCAAACCCC ACGCCAGCTT GTCGGCGCAG TGGTCGGCCG CGCTGCGCTG GCTGCTGCCG CGCCCGGCCT GGCCTTTCCT GGACAACGGG CTGAGCCACT TTTTGCTGCT GATGGGGGTC ATCGTGCCGT TGCTGGCGAC GCTGTTCGGC CTGCTGTACC GCCAGGAGAT CAGTTCGCTG GCGGAACTGG CGGCGTCCGA GTCCGCCTTG CGTTCGGGCT TTTTGAAGGC CTACATGGCG CTGCTGGTGA TTGCCGGGCT GGTGGCCTGG TGGCTGGTGC TGGCGCACAA GAGCCGGCAG GTGGCGCAGG AAGAATCGAA CCGCCAGACC CATCTGCTGA TGCAGGAAAT CGAGTCGCAC CGGCAAACCG ATCAGGCGCT GCAGCAGGCC AAGCGCGTGG CCGACCAGGC CAACCAGGCC AAGAGCCGCT ACATCAGCGC CATCAGCCAC GAGCTGCGAA CGCCGCTCAA CAGCATCCTG GGCTATGCGC AGCTGATGGG CGAGGACGCA TCCATTCCGC CGCACCGCCA GCAGGCGGTC AGCGTCATCA AGCGCGGCGG CGAACATTTG TTGTCGCTGA TCGAGGGCAC GCTCGACATT GCCCGCATCG AGGCCGGCAA GCTCACGCTC AATGTCAGGC CGATGCAGTT CGCCGACTGC GTGCACGAGG TGGCCGGCAT GTTCGAGTTG CAGGCGGCCG CCAAGGGCCT GCGCTTTGCT TTTGAAGCTG CAGGCCATCT GCCCGAACTG GTGCGCGCCG ACGAGCAGCG GGTGCGCCAG GTCTTGATCA ACCTGCTTGG CAACGCCATC AAGTTCACCG CAGAGGGCCA GGTCACCTTC AGGGTGCGCC ATGCGCGCGA GATGGCCCAT ATCGACATCG AGGACACTGG CCCCGGAATG AGCGCGGCCG AGCTGGAGAA GATATTCGAG CCTTTTGCGC GCGGCAGCAC GGCCGGGCAG AGCGTGGGCG GCTCGTCGGG CGCCGGCCTG GGCCTGACGA TTGCCAAGAT GCTGACCGAC CTGATGGGCG GCGAGATGAC GGTGGTCAGC ACGCCGGGCA AGGGCTCGGT GTTTCGCATC CGGCTGTTCT TGCCGGAGGT GCATCTGGCG ACAGCCAGCT TTCCTGCCAC CAAAGTCCGG GATGCCCGGC GCCGGCCGCA GGGCTACGAG GGCGCGCGCC GCAAGCTGCT GGTGGTGGAC AACGAGGAGC CCGACCGCGA ACTGCTGGTG CAATTGCTGG CGCCCATGGG CTTCGAGCTG CGCACCGCCG CCAGCGGCCA CGACTGCCTG GATTTGCTGG CGGCGGGTTA TCGGCCCGAC GTGATCTTCA TGGACCTGGC CATGGCCGGC ATTGACGGCT GGGAAACATT GCGCCGCGTG CGCAACGCGG GGCATGCCGG CATTCATCTG GCGATTGTGT CGGCCAACGC CTTTGACAAG GGGCTCGACA ACGACGTGGG CATACGCGCC GAGGATTTCA TTTTGAAGCC GGTGCGCCAT ACCGAGCTGA TTGACTGGCT GGAGCGCAGC CTGGGGCTGG CCTGGCGCTA TGACGCCCTG GCAGTGAACC CCGACCCGGT TGCCGCCACG CCGGCGCCGC GTGTCCTGCC CGATGCGCGC CAGCTTGCCA GCCTGCTGGA AGTGGTCCAT CTGGGTTTTT ACCGTGGCAT CCTCAACAAG CTGGCGGAAA TTGAAAAGCA GCAACCCGCC ACAGCTTCCT TTGTCGAGGA GATGCGCCTG ATGGCGCGTC AATTCCGCTT TGAAGCCATG GCCAGCCAGC TCACACAGAA AGAACCCGGT CATGAACTTG ATGCCTGA
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Protein sequence | MDAVATPSPP PPQPGTPTGS LDERRGSGAE PEVAVQRIIK VRRDYNSWVA SETMEDYALR FTPQRFRKWS EWRVANTAFG AASFLILEAV GATLLVKYGF TNAFWAIMAT GLIIFLAGLP ISIYAARYGV DMDLLTRGAG FGYIGSTLTS LIYASFTFIF FALEAAVMAY ALELVFGIPP KWGYLICALV VIPLVTHGVS TISRLQVWTQ ALWLVMLVVP FVYVFMLAPG AFSGVVQYGG EKGGGGDFNL HLFGAALTVG IALITQMGEQ ADYLRFMPVQ TKANRWRWWA GVFIGGPGWV LLGVVKMLGG ALLAYLAISN MVPLDRAVDP NQMYLAAYEY VFPNYSWAVG ATALFVVVSQ LKINVTNAYA GSLAWSNFFS RLTHSHPGRV VWLVFNTAIA FMLMEMNVFQ ALGEVLGLYS NIAIAWVMAV VADLVINKPL GLSPPGIEFK RAHLYDINPV GVGAMALASL LSITAHLGLY GELARAFSAV IAMTTAFVAA PLIAWATKGR YYIARRSASS AAGGLHKRHA TQHCVICERS YEGPDMAHCP AYQGPICSLC CTLDARCGDL CKPHASLSAQ WSAALRWLLP RPAWPFLDNG LSHFLLLMGV IVPLLATLFG LLYRQEISSL AELAASESAL RSGFLKAYMA LLVIAGLVAW WLVLAHKSRQ VAQEESNRQT HLLMQEIESH RQTDQALQQA KRVADQANQA KSRYISAISH ELRTPLNSIL GYAQLMGEDA SIPPHRQQAV SVIKRGGEHL LSLIEGTLDI ARIEAGKLTL NVRPMQFADC VHEVAGMFEL QAAAKGLRFA FEAAGHLPEL VRADEQRVRQ VLINLLGNAI KFTAEGQVTF RVRHAREMAH IDIEDTGPGM SAAELEKIFE PFARGSTAGQ SVGGSSGAGL GLTIAKMLTD LMGGEMTVVS TPGKGSVFRI RLFLPEVHLA TASFPATKVR DARRRPQGYE GARRKLLVVD NEEPDRELLV QLLAPMGFEL RTAASGHDCL DLLAAGYRPD VIFMDLAMAG IDGWETLRRV RNAGHAGIHL AIVSANAFDK GLDNDVGIRA EDFILKPVRH TELIDWLERS LGLAWRYDAL AVNPDPVAAT PAPRVLPDAR QLASLLEVVH LGFYRGILNK LAEIEKQQPA TASFVEEMRL MARQFRFEAM ASQLTQKEPG HELDA
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