| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0930 |
|---|
| Symbol | |
|---|
| ID | 4689660 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 980063 |
|---|
| End bp | 980530 |
|---|
| Gene Length | 468 bp |
|---|
| Protein Length | 155 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 639833928 |
|---|
| Product | preprotein translocase subunit SecB |
|---|
| Protein accession | YP_981168 |
|---|
| Protein GI | 121603839 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1952] Preprotein translocase subunit SecB |
|---|
| TIGRFAM ID | [TIGR00809] protein-export chaperone SecB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.603252 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGAAG CCAATCTTGA CCCCGTATTC CAGATCCAGC GCGTTTACCT CAAGGATCTG
TCGCTGGAGC AGCCCAATTC GCCTGAAATC CTGCTGAACC AGGAGCAGCC CGGCGTCGAG
ATCCAGCTTG GCGTGGATGC CAAGCCGGTG GCCGAGGGCC TGTTTGAAAT CACCGTCACC
GCCACCGTTC ACACCAAGAT CGAAGAAAAG ACCGTGTTCA TGGTCGAGGC CAAGCAGGCC
GGCATTTTTG AAATCCGCAA CATCCAGAGC GACCAGATGG GCGCGCTCTT GGGCATTGCC
TGCCCGCAAA TCGTCTATCC CTACCTGCGC AGCAACGTGG CCGACATCAT CCAGCGCGGC
GGTTTTCCGC CGGTGCACAT GGCCGAAATC AACTTCCAGG CGATGTACGA GCAGCAGCAG
GCCGAGGCCA TGATGGCCAC GTCTGAAGCA CCACAAATCC TCGTTTGA
|
|---|
| Protein sequence | MAEANLDPVF QIQRVYLKDL SLEQPNSPEI LLNQEQPGVE IQLGVDAKPV AEGLFEITVT
ATVHTKIEEK TVFMVEAKQA GIFEIRNIQS DQMGALLGIA CPQIVYPYLR SNVADIIQRG
GFPPVHMAEI NFQAMYEQQQ AEAMMATSEA PQILV
|
|---|
| |