Gene Pnap_0879 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_0879 
Symbol 
ID4688774 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp932554 
End bp934188 
Gene Length1635 bp 
Protein Length544 aa 
Translation table11 
GC content60% 
IMG OID639833875 
Productcytochrome-c oxidase 
Protein accessionYP_981117 
Protein GI121603788 
COG category[C] Energy production and conversion 
COG ID[COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 
TIGRFAM ID[TIGR02891] cytochrome c oxidase, subunit I 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGCAG TTCTAGACCA TCCCGATCAC GCGCATGATG CCCACGATCA CCATGCCCCG 
ACGGGCTGGC GCCGCTGGGT GTTTGCCACC AACCATAAAG ACATTGGCAC GCTGTACCTG
CTGTTCAGTT TCACGATGCT GATGTTCGGC GGCGTCCTGG CGCTGCTGAT CCGGGCCGAA
CTCTTCCAGC CGGGCTTGCA ACTCGTCAAC CCCGAGCTGT TCAACCAGCT CACCACCATG
CACGGCCTGA TCATGGTGTT CGGCGCCATC ATGCCGGCGT TTGTCGGGTT TGCGAACTGG
ATGATTCCGC TGCAGATCGG CGCCTCCGAC ATGGCGTTTG CGCGCATGAA CAACTTCAGC
TTCTGGCTGA TGATTCCGGC CGCTCTGATG CTGAGCACTT CCTTTTTGCT GCCGGGCGGC
GCCATGGCTG GCGGCTGGAC GATGTATGCC CCGCTGTCGC TGCAGATGGG CCCCGCGATG
GACGCCGGTA TCTTTGCCAT GCACATCCTG GGCGCTTCGT CGATCATGGG TTCGATCAAC
ATCATCGTCA CGATTTTGAA CATGCGCGCG CCCGGCATGA CGCTGATGAA AATGCCGATG
TTCTGCTGGA CCTGGCTGAT CACGGCCTAC CTGCTGATCG CCGTGATGCC GGTGCTGGCC
GGCGCCATCA CCATGACGCT GACCGACCGC CATTTCGGCA CGACCTTCTT CAACCCCGGC
GGCGGTGGCG ACCCGGTGAT GTTCCAGCAC ATCTTCTGGT TCTTCGGCCA CCCCGAGGTG
TACATCATGA TTTTGCCGGC CTTCGGGATC ATCAGCCAGA TCATTCCGGC CTTCTCGCGC
AAGCGCCTGT TCGGCTATGC CTCGATGGTG TATGCCACCG GCTCGATTGC GATTCTGAGC
TTCGTGGTCT GGGCGCACCA CATGTTCACC ACCGGCATGC CGGTCACCGG CCAGCTGTTC
TTCATGTACT CGACGATGCT GATCGCCGTG CCGACCGGCG TGAAGGTGTT CAACTGGATC
GCCACGATGT GGAAGGGCTC GATGACGTTT GAAACGCCGA TGCTGTTCGC CGTCGGTTTC
ATCTTCGTGT TCACCATTGG CGGCCTGACC GGCGTGATTC TGGCGGTCGC GCCGATTGAC
ATCCAGCTGC AGGACACCTA CTACGTGGTG GCCCACTTCC ACTACGTGCT GGTGGCCGGT
TCCCTCTATG CCATGTTTGC CGGTTACTAT TACTGGAGCC CCAAGTGGAC CGGCGTGATG
TACAGCGAAC GGCGCGGCCA GATCCACTTC TGGTGGTCGC TGATCTCCTT CAACGTGACA
TTTTTCCCGA TGCACTTCCT GGGCTTGGCC GGCATGCCGC GCCGCTATGC CGATTACCCG
ATGCAGTTTG CCGACTTCAA CGCGATTGCC AGCGTCGGCG CCTTCTTCTT CGGTTTTGCA
CAGGTGTATT TCTTCTTCTT CGTCGTCCTG CCGGCCATGC GCGGCAAGGG CGTGCCTGCC
AAGCAGAACC CCTGGCTGGA TGAAGGCGGC AAGGGCGCCG AGGGCCTGGA ATGGGAAGTG
CCATCGCCTG CACCCTTCCA TACCTTTGAA ACACCGCCCA AGCTCGATGC CACGGCAACC
CGCGTGATCG CTTGA
 
Protein sequence
MSAVLDHPDH AHDAHDHHAP TGWRRWVFAT NHKDIGTLYL LFSFTMLMFG GVLALLIRAE 
LFQPGLQLVN PELFNQLTTM HGLIMVFGAI MPAFVGFANW MIPLQIGASD MAFARMNNFS
FWLMIPAALM LSTSFLLPGG AMAGGWTMYA PLSLQMGPAM DAGIFAMHIL GASSIMGSIN
IIVTILNMRA PGMTLMKMPM FCWTWLITAY LLIAVMPVLA GAITMTLTDR HFGTTFFNPG
GGGDPVMFQH IFWFFGHPEV YIMILPAFGI ISQIIPAFSR KRLFGYASMV YATGSIAILS
FVVWAHHMFT TGMPVTGQLF FMYSTMLIAV PTGVKVFNWI ATMWKGSMTF ETPMLFAVGF
IFVFTIGGLT GVILAVAPID IQLQDTYYVV AHFHYVLVAG SLYAMFAGYY YWSPKWTGVM
YSERRGQIHF WWSLISFNVT FFPMHFLGLA GMPRRYADYP MQFADFNAIA SVGAFFFGFA
QVYFFFFVVL PAMRGKGVPA KQNPWLDEGG KGAEGLEWEV PSPAPFHTFE TPPKLDATAT
RVIA