Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_0879 |
Symbol | |
ID | 4688774 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | + |
Start bp | 932554 |
End bp | 934188 |
Gene Length | 1635 bp |
Protein Length | 544 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 639833875 |
Product | cytochrome-c oxidase |
Protein accession | YP_981117 |
Protein GI | 121603788 |
COG category | [C] Energy production and conversion |
COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
TIGRFAM ID | [TIGR02891] cytochrome c oxidase, subunit I |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGCAG TTCTAGACCA TCCCGATCAC GCGCATGATG CCCACGATCA CCATGCCCCG ACGGGCTGGC GCCGCTGGGT GTTTGCCACC AACCATAAAG ACATTGGCAC GCTGTACCTG CTGTTCAGTT TCACGATGCT GATGTTCGGC GGCGTCCTGG CGCTGCTGAT CCGGGCCGAA CTCTTCCAGC CGGGCTTGCA ACTCGTCAAC CCCGAGCTGT TCAACCAGCT CACCACCATG CACGGCCTGA TCATGGTGTT CGGCGCCATC ATGCCGGCGT TTGTCGGGTT TGCGAACTGG ATGATTCCGC TGCAGATCGG CGCCTCCGAC ATGGCGTTTG CGCGCATGAA CAACTTCAGC TTCTGGCTGA TGATTCCGGC CGCTCTGATG CTGAGCACTT CCTTTTTGCT GCCGGGCGGC GCCATGGCTG GCGGCTGGAC GATGTATGCC CCGCTGTCGC TGCAGATGGG CCCCGCGATG GACGCCGGTA TCTTTGCCAT GCACATCCTG GGCGCTTCGT CGATCATGGG TTCGATCAAC ATCATCGTCA CGATTTTGAA CATGCGCGCG CCCGGCATGA CGCTGATGAA AATGCCGATG TTCTGCTGGA CCTGGCTGAT CACGGCCTAC CTGCTGATCG CCGTGATGCC GGTGCTGGCC GGCGCCATCA CCATGACGCT GACCGACCGC CATTTCGGCA CGACCTTCTT CAACCCCGGC GGCGGTGGCG ACCCGGTGAT GTTCCAGCAC ATCTTCTGGT TCTTCGGCCA CCCCGAGGTG TACATCATGA TTTTGCCGGC CTTCGGGATC ATCAGCCAGA TCATTCCGGC CTTCTCGCGC AAGCGCCTGT TCGGCTATGC CTCGATGGTG TATGCCACCG GCTCGATTGC GATTCTGAGC TTCGTGGTCT GGGCGCACCA CATGTTCACC ACCGGCATGC CGGTCACCGG CCAGCTGTTC TTCATGTACT CGACGATGCT GATCGCCGTG CCGACCGGCG TGAAGGTGTT CAACTGGATC GCCACGATGT GGAAGGGCTC GATGACGTTT GAAACGCCGA TGCTGTTCGC CGTCGGTTTC ATCTTCGTGT TCACCATTGG CGGCCTGACC GGCGTGATTC TGGCGGTCGC GCCGATTGAC ATCCAGCTGC AGGACACCTA CTACGTGGTG GCCCACTTCC ACTACGTGCT GGTGGCCGGT TCCCTCTATG CCATGTTTGC CGGTTACTAT TACTGGAGCC CCAAGTGGAC CGGCGTGATG TACAGCGAAC GGCGCGGCCA GATCCACTTC TGGTGGTCGC TGATCTCCTT CAACGTGACA TTTTTCCCGA TGCACTTCCT GGGCTTGGCC GGCATGCCGC GCCGCTATGC CGATTACCCG ATGCAGTTTG CCGACTTCAA CGCGATTGCC AGCGTCGGCG CCTTCTTCTT CGGTTTTGCA CAGGTGTATT TCTTCTTCTT CGTCGTCCTG CCGGCCATGC GCGGCAAGGG CGTGCCTGCC AAGCAGAACC CCTGGCTGGA TGAAGGCGGC AAGGGCGCCG AGGGCCTGGA ATGGGAAGTG CCATCGCCTG CACCCTTCCA TACCTTTGAA ACACCGCCCA AGCTCGATGC CACGGCAACC CGCGTGATCG CTTGA
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Protein sequence | MSAVLDHPDH AHDAHDHHAP TGWRRWVFAT NHKDIGTLYL LFSFTMLMFG GVLALLIRAE LFQPGLQLVN PELFNQLTTM HGLIMVFGAI MPAFVGFANW MIPLQIGASD MAFARMNNFS FWLMIPAALM LSTSFLLPGG AMAGGWTMYA PLSLQMGPAM DAGIFAMHIL GASSIMGSIN IIVTILNMRA PGMTLMKMPM FCWTWLITAY LLIAVMPVLA GAITMTLTDR HFGTTFFNPG GGGDPVMFQH IFWFFGHPEV YIMILPAFGI ISQIIPAFSR KRLFGYASMV YATGSIAILS FVVWAHHMFT TGMPVTGQLF FMYSTMLIAV PTGVKVFNWI ATMWKGSMTF ETPMLFAVGF IFVFTIGGLT GVILAVAPID IQLQDTYYVV AHFHYVLVAG SLYAMFAGYY YWSPKWTGVM YSERRGQIHF WWSLISFNVT FFPMHFLGLA GMPRRYADYP MQFADFNAIA SVGAFFFGFA QVYFFFFVVL PAMRGKGVPA KQNPWLDEGG KGAEGLEWEV PSPAPFHTFE TPPKLDATAT RVIA
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