Gene Pnap_0855 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_0855 
Symbol 
ID4687951 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp905437 
End bp907767 
Gene Length2331 bp 
Protein Length776 aa 
Translation table11 
GC content63% 
IMG OID639833850 
ProductGAF sensor hybrid histidine kinase 
Protein accessionYP_981093 
Protein GI121603764 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGAATG AAATGATCTC AAGCCTGAAT GCGTGTTCTT TCATTGGCGG CAATGCCCCT 
CTTCAAATGC CTGAAAAACT GACCGAACCT GTTTTGGCGC CGCCCGTGCC GGAATTTTTG
GCTCATGGCG GCGAGATGGG CGCCCTCATC AGCGCTCAGG ACTGGAGCGG AACCGCGCTG
GGTGCGCCTG CCAGCTGGCC ACGCACTCTC AAGAGCATGC TGGCCACACT CCTCAGCAGC
CCCCAGCCCA TGATCATCGG CTGGGGCTCG GACCTTCTTT CATTCTTCAA CGACAGCTAC
CGCCCCATGC TCGGCCTGCG CTTTGACGGT TTGTCCGGCC GGCCCGCCGC CGAACAATGG
ACTGCTTCAT GGGCCGAACT TGAGCCGATG GCGAAGAAAG CACTGGGCGG TGAGGGTTCG
CACTACGAGA ACATGCCCTT CACCCTGACG CGCAACGGTT ACACGGTGCC GACCTGGTGG
ACGCTTTCCT TCATGCCATT TCGCGATGAC GATGGTGCTG TGGTCGGCGT CTATTGCTTT
CCCATCGAGA CCACGCAAAA CGTGCTGATC GAGCAGCGCA GGGAGCAAGA GCAAAAACGG
CAGGCGTTTC GGGTGAAGCT CGGCGATGCC CTGCGGGACG CGATTGAGCC GAAGTCGCTG
ATGATGGCCG CAGCCGAAAA GCTCGGCGTG CACCTGCACG CAGCTTGCGT CGGCCATGGC
GAAATTGATG CGTCGGGCGA GCGGGTGCAG ATTCACCATG CCTGGATGGC CGAAGGTTCC
CCCGCCTTGG TGGGCGCCCA CCCGCTTGAT ATCTACGGGC CGGCGGTGAT TGCCGGCTTG
CGGGCCGGCC GGACCGTGGT GGTGAACGAC ACTGCCAGCG ACCCGCTCAC GGCCTGGGCG
GCTTGCGATG CGGCTGGCGG GTCAATCGCT GCCCGGGCAT TCGTTGCCGC CCCCTTGGTC
AAGAACGGCC GTCTTGCCCT GATCTTTTTT GTGCTTGATC CCCGGCCACG CCTCTGGACG
CATGACGAGA AGGCGCTGGT CGAGGAAGTC GCCGAGCGGA CCTGGACTTC GCTGGCGCGG
CTGCGTGCAG AACTCGACGT CCACCAGATG AACAGAACGC TCGACCAGCG CACGACCGAA
TTGTTGCGCG CCGAGACTGC GCTGCGGCAA TCGCAAAAGC TTGAGGCGCT GGGCCAGCTC
ACGGGTGGGG TCGCCCATGA CTTCAACAAC CTTCTGGCGG TGATCAGTTC CTCGGTCGAG
TTGCTGCGCA GTAACAAGCT TCCCGTGGAG CGCCACGGCT ATTACCTGGA CCTGATTTAT
GACACGGTGG GCCGCGCCGT GAAACTCACC GGGCAGCTGC TGGCTTTCGC CCGGCAAGAG
CCTCTGAGCC CCGAGGTGTT CGACGTGGAC CTGCAGGTGC AAGTCGTGGT CGATCTGGTG
CGCCCGCTGA TGGGCAGGCA GGTCAATATC CTTTATCAGC CCTGCGGCCG AAACGCCTGT
GTCGCCGAGG CGGACATCAA CCAGTTTGAA ACCGCGCTGG TCAACCTCGC CATCAACGCG
CGGGACGCGA TGAGCGCAAA CGGCCAGCTC ATCATCAACG TGCAGCAGAC CGGCAGCCTG
CCGGCTGGCC CGGGCCACGG CCCCCGGGCA GGGGATTTCA TTGCCATTTC GGTCAGCGAC
ACCGGCTGCG GCATTGCGTC CGAAAAACTG GAGATGATTT TCGAGCCCTT CTACACCACC
AAAGCGGTGG GCAAGGGCAC AGGCCTGGGC CTGAGCCAGG TGTTCGGCTT TGCCAAGCAG
TCAGGCGGTG CGGTCCATGT CCGCAGCGAG CTGGGCAGGG GTTCTGTTTT TACCCTTTAC
CTGCCACGCG CCGAGAGCGA ACTCCCCGCA AAAGCATGGG CGCAATGTCC AGAGCAAGGC
GCTGATGACG GGGGCTTGGG CGTGCTGGTC GTGGAGGACA ACGAAACCCT GGCACAGATG
ACCTGCGAGA TACTGGACGC CCTGGGTTAC CGGACGGTCT GGGCGGTCAA TGCAGCGTCC
GCGCTGGCCC TGCTGGCCGG TGGCAAAAAC CGCTTTGACC TGGTTTTCTC CGACGTGGTC
ATGCCTGGCA TGAACGGGAT CGAGTTCGGT GAGCAGGTGC GCAAGCATCA TCCCGGGCTT
CCCGTGGTGC TGGCCAGCGG CTACAACGCG GTCATGGCCG AACAGGGGCC GCATGGGTTT
GAACTGATCT TGAAACCCTA CACGACCGAT ACCCTGGTGC GGGTCTTTCG CAAGGCCATC
GCGGAGCAGA CATTGCCGCC GGTCTTGTCG GGCAGTGATG CGGCTGGGTA A
 
Protein sequence
MQNEMISSLN ACSFIGGNAP LQMPEKLTEP VLAPPVPEFL AHGGEMGALI SAQDWSGTAL 
GAPASWPRTL KSMLATLLSS PQPMIIGWGS DLLSFFNDSY RPMLGLRFDG LSGRPAAEQW
TASWAELEPM AKKALGGEGS HYENMPFTLT RNGYTVPTWW TLSFMPFRDD DGAVVGVYCF
PIETTQNVLI EQRREQEQKR QAFRVKLGDA LRDAIEPKSL MMAAAEKLGV HLHAACVGHG
EIDASGERVQ IHHAWMAEGS PALVGAHPLD IYGPAVIAGL RAGRTVVVND TASDPLTAWA
ACDAAGGSIA ARAFVAAPLV KNGRLALIFF VLDPRPRLWT HDEKALVEEV AERTWTSLAR
LRAELDVHQM NRTLDQRTTE LLRAETALRQ SQKLEALGQL TGGVAHDFNN LLAVISSSVE
LLRSNKLPVE RHGYYLDLIY DTVGRAVKLT GQLLAFARQE PLSPEVFDVD LQVQVVVDLV
RPLMGRQVNI LYQPCGRNAC VAEADINQFE TALVNLAINA RDAMSANGQL IINVQQTGSL
PAGPGHGPRA GDFIAISVSD TGCGIASEKL EMIFEPFYTT KAVGKGTGLG LSQVFGFAKQ
SGGAVHVRSE LGRGSVFTLY LPRAESELPA KAWAQCPEQG ADDGGLGVLV VEDNETLAQM
TCEILDALGY RTVWAVNAAS ALALLAGGKN RFDLVFSDVV MPGMNGIEFG EQVRKHHPGL
PVVLASGYNA VMAEQGPHGF ELILKPYTTD TLVRVFRKAI AEQTLPPVLS GSDAAG