| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0820 |
|---|
| Symbol | |
|---|
| ID | 4690106 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 865711 |
|---|
| End bp | 867438 |
|---|
| Gene Length | 1728 bp |
|---|
| Protein Length | 575 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639833817 |
|---|
| Product | phosphotransferase domain-containing protein |
|---|
| Protein accession | YP_981060 |
|---|
| Protein GI | 121603731 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1796] DNA polymerase IV (family X) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.859645 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAATCC AGAATGCCGA AATTGCCGCG GTGCTGAATG AAATCGCCGA CCTGCTCGAC
ATTCAGGAGG CGAACCCCTT TCGCATTCGC GCCTACCGCA ATGCCGCGCG CACGGTGGGC
GAGGCCGGCC GCAGCGTGCC GGCCATGGTG GCGCGCCAGG CCGACCTGGA TGCGCTGCCG
GGCATCGGGC CGGACCTGGC AGGCAAGATC ACCGAGATCG TCAACACCGG CAGTTGCGCC
CTGCTGGAGC GCTTGCGCAA GGAACTGCCG CCGGGCATCA CCGAATTGCT GAAAGTGCCC
GGGCTGGGGC CCAAGCGCGT CAGGGCGCTG TACCACGACC TTGGCGTGCA GACGCTGGCG
CAACTGCATC TTGCCGCCCA GGAGGGCCGG GTGCAGGCCA TCGCCGGCTT TGGGCCGAAG
ACGCAGCAGG CGCTGCTGGA GGCGACGGCG GCGCGGCTGA GGCAAGAGCG CCGTTTTCCG
CTCGGCGTGG CTGACGAAAC GGCGGCAGCG CTGCTGGCCG GCCTTGCGGC GGTGCCCGGC
GTTGCGCGCG CGGTGGCCGC CGGCAGCCTG CGGCGGCGGC GTGAGACGGT CGGCGATCTG
GACCTGCTGG TCAGCCTGAG CGGCGACAGC GCGGTGATGG CGCACTTTAT TCAGGGCGAA
GATGGGCGCC AGGTGCTGCT TCACGGCGGC ACCCGCGCCA GCGTGGTGCT CAAAAGCGGC
CTGCAGGTGG ACCTGCGCGC GGTGCCGGCG CAAAGCTTGG GCGCCGCCTG GGTGTACTTC
ACCGGCTCGA AGGCGCACAA CATCGCGCTG CGGCGGCTGG CGCAGGAGCA GGGCCTGAAG
GTCAATGAAT ACGGCGTGTT CCGGGGCGCT GAACGCATCG CCGGCGCCAC CGAGGCGTCG
CTCTACCAGG CGCTCGGGCT GCGCTACATC GAGCCCGAAC TGCGCGAGGA CCGGGGCGAA
ATCGAGGCGG CGCGCCAGGA CCGGCTGCCG GTGCTGGTGA GCCTGGCCGA CTTGCGCGGC
GACCTGCACC TGCATACCCG CGACAGCGAC GGCCGGGACA GCCTGGAGGC CATGGCGGCG
GCGGCCCGGG CGCGCGGCTG GCGCTATGCG GCCGTCACCG ACCACTCGCG CAGCCCGGCC
TTTGCGCGCG GCCTGGACCC GGTGCGGCTG GCCAAGCAGA TCGACCGCAT CGACCGCTTC
AACGAAAAGG CCCAGGGCTT CACCGTGCTC AAGGGCATCG AGGTCGATAT CCTGCAGGAC
GGCACGCTCG AACTGCCGGA CTCGATCCTG CAGCGGCTGG ACCTGGTGGT GGGCGCCGTG
CACCACCACC TGGACCTGCC GCGCGCCCGG CAGACCGAGC GCGTGCTGCG CGCCATGGAC
AGCCGCTATT TCACGCTGCT TGCGCACCCG ACGGGGCGCC TGATCGGCGA GCGCGCGCCC
TGCGAGATCG ACCTGCTGCG GGTGCTGCGC AAGGCCCGGG AGCGCGGCTG TTTCGTCGAG
CTCAATGCCC AGCCCGCGCG GCTCGACCTG GCCGACACCG CCTGCCAGAT GGCCAAGGCC
GAAGGCGTGC TGGTCAGCAT CAACTCCGAC GCGCACGGCA CGCTGGAATT CAACCACCTG
CCATCGGGCA TCGACCAGGG GCGCCGTGGC TGGCTCGAAA AGGCCGATGT GCTGAACACG
CGCGACTTGC CGGAGCTGCG GCCGCTGCTG GCGCGCACGA TGGGGTAA
|
|---|
| Protein sequence | MPIQNAEIAA VLNEIADLLD IQEANPFRIR AYRNAARTVG EAGRSVPAMV ARQADLDALP
GIGPDLAGKI TEIVNTGSCA LLERLRKELP PGITELLKVP GLGPKRVRAL YHDLGVQTLA
QLHLAAQEGR VQAIAGFGPK TQQALLEATA ARLRQERRFP LGVADETAAA LLAGLAAVPG
VARAVAAGSL RRRRETVGDL DLLVSLSGDS AVMAHFIQGE DGRQVLLHGG TRASVVLKSG
LQVDLRAVPA QSLGAAWVYF TGSKAHNIAL RRLAQEQGLK VNEYGVFRGA ERIAGATEAS
LYQALGLRYI EPELREDRGE IEAARQDRLP VLVSLADLRG DLHLHTRDSD GRDSLEAMAA
AARARGWRYA AVTDHSRSPA FARGLDPVRL AKQIDRIDRF NEKAQGFTVL KGIEVDILQD
GTLELPDSIL QRLDLVVGAV HHHLDLPRAR QTERVLRAMD SRYFTLLAHP TGRLIGERAP
CEIDLLRVLR KARERGCFVE LNAQPARLDL ADTACQMAKA EGVLVSINSD AHGTLEFNHL
PSGIDQGRRG WLEKADVLNT RDLPELRPLL ARTMG
|
|---|
| |