| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0784 |
|---|
| Symbol | ubiB |
|---|
| ID | 4687846 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 826849 |
|---|
| End bp | 828402 |
|---|
| Gene Length | 1554 bp |
|---|
| Protein Length | 517 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 639833780 |
|---|
| Product | putative ubiquinone biosynthesis protein UbiB |
|---|
| Protein accession | YP_981024 |
|---|
| Protein GI | 121603695 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0661] Predicted unusual protein kinase |
|---|
| TIGRFAM ID | [TIGR01982] 2-polyprenylphenol 6-hydroxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGGA TTTTCAGGGG GATTTTCATT GTCTGGACCG TATTGCGGTT TGGTCTGGAC
GAGTTGGTGC TGTCCAGTTT TGAAAAACCG TGGATTCGCC TGCTGACGCG CATCGTGTCG
GTCGGGCGCA ACCTGAAGGC TCCCAGGGGT GAACGCCTTC GGCAGGCGCT CGAACATCTG
GGTCCGATTT TTGTCAAGTT TGGCCAGGTT CTGTCCACCC GCCGCGACTT GCTGCCGCCC
GATATTGCCG ATGAGCTGGC GCGTCTGCAG GACCGGGTGC CGCCATTTCC GTCTGCCGTG
GCTGTGGCGA TCATTGAAAA GTCCTTTGGC CGGCCGCTGG ACCGCATCTT TGAAAGCTTT
GAGCAAACGC CCGTGGCCAG CGCTTCCATT GCCCAGGTTC ACTTTGCCAC ACTGCCCGGT
GGCCGCGAGG TCGCCGTCAA GGTGCTGCGG CCCAACATGG TGGCCGCTTT CAGGAAGGAT
CTGGCGCTGA TGCGCATGAT GGCGGGCTGG GTTGAGCGCG CGTCAAGCGA TGGCAAGCGC
CTGAAGCCGC GCGAGGTGGT GGCCGAGTTC GACAAATACC TTCATGACGA ACTTGATTTG
CTGCGCGAGG CGTCCAATGC GGCACAGCTG CGCCGCAACA TGAAAAGCCT TGACCTGGTG
ATGATCCCGG AAATGTACTG GGAATACTGC ATGCCCGATG TGATGGTGAT GCAGCGCATG
CACGGGGTGC CCATTGGCCA GACCCAGCGC CTGCGCGATG CCGGCGTGGA CATGAAGAAA
CTGTCGCGCG ATGGCGTCAC CATCTTCTTT ACCCAGGTGT TTCGCGACGG CTTCTTTCAT
GCCGACATGC ATCCGGGAAA CCTCCAGGTC AGCCTGGCGC CGGAAACCTT CGGGCGCTAT
ATTTTGCTCG ATTTCGGAAT CGTGGGAACG CTGACCGAGG TGGACAAGGA ATACCTGGCG
CAAAACTTCA GCGCGTTTTT CCAGCGCGAC TACAAGCGCG TGGCCGAGTT GCACATCGAG
TCGGGCTGGG TTCCTCCGGC GACTCGCGTC GATGAGCTGG AGTCCGCGAT TCGCGCCTGC
TGCGAGCCGA TGTTCGACCG CCCGCTCAAG GATCTGTCGC TGGGAATGGT GCTGATGCGG
CTGTTCCAGA CCTCGCGCCG CTTTCAGGTG GAAATCCAGC CACAACTGGT GCTGCTGCAG
AAAACGCTGC TCAATATTGA AGGCCTGGGG CGCGAGTTGG ACCCCGACCT GGATCTCTGG
AGCACGGCCA AACCTTTTCT GGAGCGCTGG ATGCTGGAGC AGGTCGGCCC TGAAAAACTG
CTGGCCCAGC TGAAGGCGGA AGCACCTTCT TATGCCAAGC TGCTGCCCAT GCTGCCGCGC
CTGATGGCGC AGTACCTGAA GGCCGGCCCG CCGGCAAGTC CTAGCCACCT GAGCGAATTG
CTGGCAGAAC AAAAGCGCAC CAACAAGCTG CTGCAAAGCC TGATCTATGG CGGCCTGGGT
TTTGTCCTGG GGCTGATTTT CATGCAGATC GTCCTGCGCA TCCGGCTGTT TTGA
|
|---|
| Protein sequence | MSRIFRGIFI VWTVLRFGLD ELVLSSFEKP WIRLLTRIVS VGRNLKAPRG ERLRQALEHL
GPIFVKFGQV LSTRRDLLPP DIADELARLQ DRVPPFPSAV AVAIIEKSFG RPLDRIFESF
EQTPVASASI AQVHFATLPG GREVAVKVLR PNMVAAFRKD LALMRMMAGW VERASSDGKR
LKPREVVAEF DKYLHDELDL LREASNAAQL RRNMKSLDLV MIPEMYWEYC MPDVMVMQRM
HGVPIGQTQR LRDAGVDMKK LSRDGVTIFF TQVFRDGFFH ADMHPGNLQV SLAPETFGRY
ILLDFGIVGT LTEVDKEYLA QNFSAFFQRD YKRVAELHIE SGWVPPATRV DELESAIRAC
CEPMFDRPLK DLSLGMVLMR LFQTSRRFQV EIQPQLVLLQ KTLLNIEGLG RELDPDLDLW
STAKPFLERW MLEQVGPEKL LAQLKAEAPS YAKLLPMLPR LMAQYLKAGP PASPSHLSEL
LAEQKRTNKL LQSLIYGGLG FVLGLIFMQI VLRIRLF
|
|---|
| |