Gene Pnap_0767 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_0767 
Symbol 
ID4689223 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp810814 
End bp812031 
Gene Length1218 bp 
Protein Length405 aa 
Translation table11 
GC content57% 
IMG OID639833763 
Producttype II secretion system protein 
Protein accessionYP_981007 
Protein GI121603678 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1459] Type II secretory pathway, component PulF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.336248 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.146084 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAACCG CAGCATCAAA AGGCATCAAG GAATTTGTTT TCGAATGGGA AGGCAAGGAC 
CGGGGAGGCA AACAGGTTCG CGGAGAGATT CGCGCTTCTG GTGAAAACCA GGTCAAGGTG
TCGCTGCGCC GGCAGGGCGT GCTGGCGAGC AAGATCAAGA AACGCCGCAT GCGCTCGGGC
AAGGCCATCA AGCCGCGCGA CATCGCCATC TTTACCCGCC AGCTTGCCAC CATGATGAAG
GCCGGCGTGC CGCTGCTGCA GTCCTTTGAC ATTGTGGGGC GAGGCAATCC CAACGGCAGC
GTGACCAAAC TGCTGAACGA TGTACGCACG GATGTGGAAA CAGGAACGTC GCTCAGCGGT
GCTTTCCGCA AATACCCGAT GTACTTCAAT GCGCTGTACT GCAACCTGGT CGAAGCGGGC
GAAGCAGCCG GTATCCTGGA GTCGCTGCTG GACCGGCTGG CCATCTATAT GGAGAAAACA
GAGGCCATCA AGTCAAAGAT CAAATCGGCC CTGATGTACC CAGCTTCTGT CGTGGTGGTG
GCTTTTGTCG TGGTGGCCGT GATCATGATT TTCGTGATTC CAGCATTCAA GCAGGTGTTT
TCTTCCTTTG GTGCCGAGTT GCCAGCACCC ACGCTCATCG TGATGGCCAT CAGCGAGTTC
TTTGTGGCTT ACTGGTGGCT GATTTTCGGT GGTGTGGGTG GCGGTATTTA TTTTTTCCTG
CAGGCCTGGA AGCGCAGTGA AAAAATGCAG AAAGTCATGG ACCGGCTGCT GCTGAAAATG
CCTGTGTTCG GCAGCCTGAT AGAAAAGTCC GTGATCGCCC GCTGGACCCG TACCCTGTCC
ACCATGTTTG CGGCCGGCGT GCCGCTGGTC GAAGCCCTCG ACTCGGTGGG CGGCGCTTCG
GGGAACTCCC TGTATGCCGA TGCCACCGAG AAAATCCAGC AGGAAGTCTC GACCGGCACC
AGCCTGACAG CGGCCATGGG CAATGCCAAC CTGTTTCCCA CGATGGTGCT GCAGATGTGC
GCCATTGGCG AGGAGTCGGG CTCGGTAGAC CACATGCTGG GCAAGGCGGC CGATTTTTAT
GAAGCCGAAG TCGATGAAAT GGTGGCCGGC CTGTCCAGCC TGATGGAGCC CATCATCATT
GTATTTCTGG GCACCCTGAT TGGCGGCATC GTGGTTTCCA TGTACCTGCC GATTTTCAAG
CTGGGTGCGG TCGTTTGA
 
Protein sequence
MATAASKGIK EFVFEWEGKD RGGKQVRGEI RASGENQVKV SLRRQGVLAS KIKKRRMRSG 
KAIKPRDIAI FTRQLATMMK AGVPLLQSFD IVGRGNPNGS VTKLLNDVRT DVETGTSLSG
AFRKYPMYFN ALYCNLVEAG EAAGILESLL DRLAIYMEKT EAIKSKIKSA LMYPASVVVV
AFVVVAVIMI FVIPAFKQVF SSFGAELPAP TLIVMAISEF FVAYWWLIFG GVGGGIYFFL
QAWKRSEKMQ KVMDRLLLKM PVFGSLIEKS VIARWTRTLS TMFAAGVPLV EALDSVGGAS
GNSLYADATE KIQQEVSTGT SLTAAMGNAN LFPTMVLQMC AIGEESGSVD HMLGKAADFY
EAEVDEMVAG LSSLMEPIII VFLGTLIGGI VVSMYLPIFK LGAVV