Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_0767 |
Symbol | |
ID | 4689223 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | + |
Start bp | 810814 |
End bp | 812031 |
Gene Length | 1218 bp |
Protein Length | 405 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 639833763 |
Product | type II secretion system protein |
Protein accession | YP_981007 |
Protein GI | 121603678 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1459] Type II secretory pathway, component PulF |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.336248 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.146084 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCAACCG CAGCATCAAA AGGCATCAAG GAATTTGTTT TCGAATGGGA AGGCAAGGAC CGGGGAGGCA AACAGGTTCG CGGAGAGATT CGCGCTTCTG GTGAAAACCA GGTCAAGGTG TCGCTGCGCC GGCAGGGCGT GCTGGCGAGC AAGATCAAGA AACGCCGCAT GCGCTCGGGC AAGGCCATCA AGCCGCGCGA CATCGCCATC TTTACCCGCC AGCTTGCCAC CATGATGAAG GCCGGCGTGC CGCTGCTGCA GTCCTTTGAC ATTGTGGGGC GAGGCAATCC CAACGGCAGC GTGACCAAAC TGCTGAACGA TGTACGCACG GATGTGGAAA CAGGAACGTC GCTCAGCGGT GCTTTCCGCA AATACCCGAT GTACTTCAAT GCGCTGTACT GCAACCTGGT CGAAGCGGGC GAAGCAGCCG GTATCCTGGA GTCGCTGCTG GACCGGCTGG CCATCTATAT GGAGAAAACA GAGGCCATCA AGTCAAAGAT CAAATCGGCC CTGATGTACC CAGCTTCTGT CGTGGTGGTG GCTTTTGTCG TGGTGGCCGT GATCATGATT TTCGTGATTC CAGCATTCAA GCAGGTGTTT TCTTCCTTTG GTGCCGAGTT GCCAGCACCC ACGCTCATCG TGATGGCCAT CAGCGAGTTC TTTGTGGCTT ACTGGTGGCT GATTTTCGGT GGTGTGGGTG GCGGTATTTA TTTTTTCCTG CAGGCCTGGA AGCGCAGTGA AAAAATGCAG AAAGTCATGG ACCGGCTGCT GCTGAAAATG CCTGTGTTCG GCAGCCTGAT AGAAAAGTCC GTGATCGCCC GCTGGACCCG TACCCTGTCC ACCATGTTTG CGGCCGGCGT GCCGCTGGTC GAAGCCCTCG ACTCGGTGGG CGGCGCTTCG GGGAACTCCC TGTATGCCGA TGCCACCGAG AAAATCCAGC AGGAAGTCTC GACCGGCACC AGCCTGACAG CGGCCATGGG CAATGCCAAC CTGTTTCCCA CGATGGTGCT GCAGATGTGC GCCATTGGCG AGGAGTCGGG CTCGGTAGAC CACATGCTGG GCAAGGCGGC CGATTTTTAT GAAGCCGAAG TCGATGAAAT GGTGGCCGGC CTGTCCAGCC TGATGGAGCC CATCATCATT GTATTTCTGG GCACCCTGAT TGGCGGCATC GTGGTTTCCA TGTACCTGCC GATTTTCAAG CTGGGTGCGG TCGTTTGA
|
Protein sequence | MATAASKGIK EFVFEWEGKD RGGKQVRGEI RASGENQVKV SLRRQGVLAS KIKKRRMRSG KAIKPRDIAI FTRQLATMMK AGVPLLQSFD IVGRGNPNGS VTKLLNDVRT DVETGTSLSG AFRKYPMYFN ALYCNLVEAG EAAGILESLL DRLAIYMEKT EAIKSKIKSA LMYPASVVVV AFVVVAVIMI FVIPAFKQVF SSFGAELPAP TLIVMAISEF FVAYWWLIFG GVGGGIYFFL QAWKRSEKMQ KVMDRLLLKM PVFGSLIEKS VIARWTRTLS TMFAAGVPLV EALDSVGGAS GNSLYADATE KIQQEVSTGT SLTAAMGNAN LFPTMVLQMC AIGEESGSVD HMLGKAADFY EAEVDEMVAG LSSLMEPIII VFLGTLIGGI VVSMYLPIFK LGAVV
|
| |