| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0756 |
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| Symbol | |
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| ID | 4689724 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 800387 |
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| End bp | 802603 |
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| Gene Length | 2217 bp |
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| Protein Length | 738 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 639833752 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_980996 |
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| Protein GI | 121603667 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.2147 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACATC CGATCAGCAA CACCCGCCAG CTCGCTATTA TTTCAATAGC TACCAGCGCC
CTACTGGCGT GCGGAACAGG CATATTTCCT TCAAATCTAC AGGCTCAGCC GCAAGTCGCC
TCGCCGCCGT CGCCGTCCGA ACCCCGGCGC GGCGAAGCCA TCACCCTGAA CTTCGTCAAC
GCCAACATCG ACGCGGTGGC CCGCACCATG GCCACGCTGA CCGGCCGCAA CGTGGTGGTC
GATCCGCGCG TCAAGGGCAC GATCACGCTG ACGACGGAAC GCGCGGTCAG CCCGGCGGCG
GCCTACAGCC AGTTTCTGGC CATACTGCGG CTGCAGGGCT TTACCGTGGT CAACGCAGCC
GGCCTGGACA AGATCGTTCC CGAGGCCGAT GCCAAGCTGC AGGGCGGCGC GGTATCGACC
AACGTGCCGG TGGGCGGCGG CCAGATTGCC ACCACCATCT TCAAGCTCAG CTTCGAGAAC
GCCAACAACC TGCTGCCCAT CCTGCGGCCG CTGATCAGCC CCAACAACAC CATCAATGTC
AACCCCGGCA ACAATTCGCT GGTGATCACC GACTATGCCG ACAACCTGAA CCGCCTGGCC
CGCATCATTG CCGCGCTGGA TGTGGCCAAC GCCACCGATG TCGAGCTGAT TCCGGTGCGC
TATGCGTCGG TGACCGACAT CGCGCCACTG CTGACGCGCT TGCTCGACAG CAGTGCCGGC
GGCGTGGCGG CGACCGCCGA AGCCAGCTAT AAAACGACGG TGCTGGCCGA GCCGCGCAGC
AATTCGCTGA TTGTTCGCGC CGCCAACGGC GCACGCCTGG AACTGGTGAA GTCGCTGCTC
AAGACCCTGG ACACGCCGAC GCTGAACGGC CCCAACGGCG ATGCCGGCAA CATCTATGTG
GTGTACCTGA AAAACGCCGA CGCCGCCAAC CTCGCCACCG TGCTGCGCGC CGCCATGACC
GGAACGTCCA GCGGCGGCTC GGGCTCGACC AGCCTGGCCA CGTCCCAGGG CAATGCATCG
GCCATGACCA CGTCAAGCCA GCCCGGCGGG GCGGCGGGAG GCAACCAGAG CAGCGCGGCG
ACAGCCCCGA TCACGCCCAG CGCGGGGCCG TCCACCGGCG GGCAAATCCA GGCCGACCCG
GCGACCAACT CACTCATCAT CACCGCCTCC GAGCCGCAAT ACCGCCAGCT GCGCGCCGTC
ATTGAAAAGC TTGACGCGCG GCGGGCGCAA GTCTATGTGG AAAGCCTGAT CGCCGAGGTC
AACATGGACA AGGCGGCCGA GTTCGGCATC CAGTGGCAGG GGCCCATCGG CGGCAAGGGC
GACAGCCTGA TCGGGCTGCT GGGCACCAAC TTTGGCAGCA GCGGCAAAAA CATCATCCAG
TCGGCCATCG GAGCGGCCAG CGGCACCCCG CTGGCACCCG GCACAGGCCT GAACCTGGGC
GTCGCGGCGC GCAGCAACGG CGTGTATTTC CTGGGTTTTC TGGCCAACTT TTTGCAAACC
TCGGGCGCTG GCAACATCCT GTCAACGCCC AACCTGCTGA CGCTGGACAA CGAGGAAGCC
AAGATCATCA TCGGGCAGAA CGTGCCTTTC GTGACCGGGC AATTCACCAA CACCGGCAGC
GGCGGCAGCA ACGGCAGCGT CAACCCGTTC CAGACCATCG AGCGCAAGGA CGTCGGCCTG
ACCTTGCGGG TCAAGCCGCA GATCAGCGAA AACGGCACCG TCAAGATGGC GATCTTCCAG
GAAGTCTCCA GCGTGCAGCC GGGCTCGGTC AATTCAGTCA CCGGCCTGAT CACCAACAAG
CGCTCCATCG AGTCGCATGT GCTGGTCGAG GACGGCTCCA TCATCGTGAT CGGCGGGCTG
CTGCAGGACG AGTTCGCGGG CAACCAGGAA AAGGTGCCGG GGCTGGGCGA TGTGCCGGTG
TTCGGCAACC TGTTCAAGTC CGAGAGCCGC AGCCGCAAGA AGACCAACCT GATGGTGTTT
TTGCGGCCGG TGGTGGTGCG CGACGGGGCC GCCACGAGTG CCCTGTCGAT GGACCGCTAT
GAGTTCATGC GCACCAACCA GCAGCAGACG CAGCCGCTCA ACAGCGCCCT GGTGCCAGTC
AATGAATCGC CGGTATTGCC GGCCATCGCC CCCGCCCGGC CGGAGCAAGC GCCTGCCCAG
CCGGCTTCTC AACAGCTTTT CCAGTCGGCG CCTCTGCCTC CGGTGACTGA CCGATAA
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| Protein sequence | MKHPISNTRQ LAIISIATSA LLACGTGIFP SNLQAQPQVA SPPSPSEPRR GEAITLNFVN
ANIDAVARTM ATLTGRNVVV DPRVKGTITL TTERAVSPAA AYSQFLAILR LQGFTVVNAA
GLDKIVPEAD AKLQGGAVST NVPVGGGQIA TTIFKLSFEN ANNLLPILRP LISPNNTINV
NPGNNSLVIT DYADNLNRLA RIIAALDVAN ATDVELIPVR YASVTDIAPL LTRLLDSSAG
GVAATAEASY KTTVLAEPRS NSLIVRAANG ARLELVKSLL KTLDTPTLNG PNGDAGNIYV
VYLKNADAAN LATVLRAAMT GTSSGGSGST SLATSQGNAS AMTTSSQPGG AAGGNQSSAA
TAPITPSAGP STGGQIQADP ATNSLIITAS EPQYRQLRAV IEKLDARRAQ VYVESLIAEV
NMDKAAEFGI QWQGPIGGKG DSLIGLLGTN FGSSGKNIIQ SAIGAASGTP LAPGTGLNLG
VAARSNGVYF LGFLANFLQT SGAGNILSTP NLLTLDNEEA KIIIGQNVPF VTGQFTNTGS
GGSNGSVNPF QTIERKDVGL TLRVKPQISE NGTVKMAIFQ EVSSVQPGSV NSVTGLITNK
RSIESHVLVE DGSIIVIGGL LQDEFAGNQE KVPGLGDVPV FGNLFKSESR SRKKTNLMVF
LRPVVVRDGA ATSALSMDRY EFMRTNQQQT QPLNSALVPV NESPVLPAIA PARPEQAPAQ
PASQQLFQSA PLPPVTDR
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