Gene Pnap_0735 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_0735 
Symbol 
ID4686432 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp775135 
End bp777186 
Gene Length2052 bp 
Protein Length683 aa 
Translation table11 
GC content57% 
IMG OID639833730 
ProductFis family GAF modulated sigma54 specific transcriptional regulator 
Protein accessionYP_980975 
Protein GI121603646 
COG category[K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG3284] Transcriptional activator of acetoin/glycerol metabolism 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.431182 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0765632 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAACAG TGATGTATAC CCCGATGGCG GGTCGCCCGG TGCATTCGCC AGACCAGGAA 
GTTCATGAGC TTGACCATCC CAATCTGATC ATGGAGTCGC ATACGCGGTC TAAAGCTTAT
GGCATAGACC GCGACGACAT ACCCGATTTT TCACCCGAAA GCCCGGCCAG GCTGGCCCAG
GGGCTGGATG AAAACAAGTT CCTGCTGGAG CATGCCATGC CCGTCATGGA AACCCTTCAT
GAACAAATTG CCAACACCCA CAACATGGTG CTGCTGACCG CGTCGAATGG CTTGGTGCTG
CACTCGCTGG GCGACATGGA TTTCCTGGAA AAGGCGATGC AGGTGGCGTT GGTGCCAGGC
GTGTGCTGGT CCGAAAAAAG CAAGGGGACC AACGCCATTG GCACCGCCTT GACAGAAGAA
CTGCCGGTGA CCATACGCGG TTCCGAGCAT TTCATGCATG CCAACCAGTT TCTGACGTGT
TCATGCGCCC CTGTTTTTGA CCCTTACGGC CAGATCATTG GTGCGCTGGA TGTGACGGGG
GATCAGCGAA ATTTTCATCA GCACACCATG GCTCTGGTGC GCATGTCGGT TCAGATGATC
GAGAACCACA TGTTCGCCGA CATTTTCCCG ACGGCAGTTC GCATTCACTT TCATACACGC
TCCGAATTCC TGGGCACCCT GGTTGAAGGC ATCGCCGTTT TCTCGCACGA GGGGCGCTTC
CTGTCCGCCA ACCGCAGCGC CCAGTTTCAG CTGGGCATGT CCTTCAATGC GCTGAAGGGT
CATACTTTTT CTTCCCTGTT TGACATTCCC ATCTCCAGGC TCCATGAACT GCGTGGCAAT
GCCCTGACCA AACCCCAGCA GTTTGTTCTG CACAACGGGG TGTCGGTCTG GTGCAGAATT
AAAATGAAAC CGCTGAGCCT GTGGTCGGAC GGGCAAGCGA TCAACACGGC AGCGAGCAAC
CCGTTCAAAC CACCAGAAGC TAAAAATTAT GCAGGCATGG CCCCGGCAGC GGAAACAGGC
TTTAGCCCTG CGCGCAAAGT ACAACTCTCC ACTTTGCACT ACCTGAACAC CGGCGACCCC
CAGGTGGCCA CCGTCATCCA GAAACTGAGC ATGGTGCGTG GCCGTGACAT TCCGATCATG
ATTCTGGGAG AAACCGGGAC TGGCAAGGAC TTGCTGGCCC AGGCCATTCA CGGCGATTCC
GACCGGGCCG GCCATCCTTT CGTGTCAGTC AACTGCGCCT CCATTCCCGA GACGCTGATC
GAATCAGAAT TGTTTGGCTA CGAAGAAGGC GCTTTTACCG GAGCCAAGAA AAAAGGCGCC
ACCGGAAAAA TCCAGCAAGC CAACGGCGGT ACGCTTTTTC TCGATGAGAT TGGCGACATG
CCCAGGCACC TGCAGGCACG GTTGCTGCGC GTGCTGCAAG ATAAAAAAGT CAGTCCTCTG
GGCGCAGGCA GGGAGGTGGA GGTGGACGTG GCCGTGATTT GCGCCACCAA CAAGAACCTG
AAGGAAATGA TCGTCCGGGG AGAGTTTCGC GAGGATCTGT ACTATCGCCT CAATGGCCTG
GTGGTTCGGC TGCCCGCCTT GCGCCATCGC ACCGACTTTG AAGTCGTCAT GCAGAAAATC
CTGAAAAGCT TGTGCGAAAA CGGCGCCCAG ATTGGCATTT CGGCCGATGT GATGACCCTG
TTCCATACGC ACCAATGGCC TGGAAACTTC AGGCAGTTGC ACAACCTGTT GCGCACGGCA
GTGGTCATGG TCGGCTGCGA AGGTGTGATA CAGCGCAACC ACTTGCCCGA CGATTTTCTC
GAAGAGCATG AACATGTGCT GCAAGCGGTT GCACAACCTT CACCTTCTTC TGCAGCCGCT
CCGGAAAATG CAATGCCGAA CATGCCAGGC GATACCGATG GGCAGCGGCT GCAAGATGTG
GCCTTGGTGG CCATGACCAA GATGCTGCAA CACCACAAGG GCAATGTGTC GGCGGCGGCC
AAGGCGCTGG GCGTGTCCCG CAACACGGTG TACCGCCGCA AGGAACAGCT ACCGCCCGAC
GTCTGGAACT GA
 
Protein sequence
MRTVMYTPMA GRPVHSPDQE VHELDHPNLI MESHTRSKAY GIDRDDIPDF SPESPARLAQ 
GLDENKFLLE HAMPVMETLH EQIANTHNMV LLTASNGLVL HSLGDMDFLE KAMQVALVPG
VCWSEKSKGT NAIGTALTEE LPVTIRGSEH FMHANQFLTC SCAPVFDPYG QIIGALDVTG
DQRNFHQHTM ALVRMSVQMI ENHMFADIFP TAVRIHFHTR SEFLGTLVEG IAVFSHEGRF
LSANRSAQFQ LGMSFNALKG HTFSSLFDIP ISRLHELRGN ALTKPQQFVL HNGVSVWCRI
KMKPLSLWSD GQAINTAASN PFKPPEAKNY AGMAPAAETG FSPARKVQLS TLHYLNTGDP
QVATVIQKLS MVRGRDIPIM ILGETGTGKD LLAQAIHGDS DRAGHPFVSV NCASIPETLI
ESELFGYEEG AFTGAKKKGA TGKIQQANGG TLFLDEIGDM PRHLQARLLR VLQDKKVSPL
GAGREVEVDV AVICATNKNL KEMIVRGEFR EDLYYRLNGL VVRLPALRHR TDFEVVMQKI
LKSLCENGAQ IGISADVMTL FHTHQWPGNF RQLHNLLRTA VVMVGCEGVI QRNHLPDDFL
EEHEHVLQAV AQPSPSSAAA PENAMPNMPG DTDGQRLQDV ALVAMTKMLQ HHKGNVSAAA
KALGVSRNTV YRRKEQLPPD VWN