Gene Pnap_0709 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_0709 
Symbol 
ID4688126 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp751379 
End bp752545 
Gene Length1167 bp 
Protein Length388 aa 
Translation table11 
GC content64% 
IMG OID639833703 
Productpeptidase S1 and S6, chymotrypsin/Hap 
Protein accessionYP_980949 
Protein GI121603620 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID[TIGR02037] periplasmic serine protease, Do/DeqQ family
[TIGR02038] periplasmic serine pepetdase DegS 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.675227 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCGCA CCTGGCTCCT GTTTTCCCAG ACCGTCACTA TTTTGGTGGC GGCTTATTTC 
GTGGTTGCCA CGCTGCAGCC GCAGTGGCTG AATAAGCGAA CCTCGCTGGG CGGCGTGTCG
GTCATCGAGG CACCGTCCAG CAGCGTGCCA CGTGCCATTG GTTCATCCAG TCCAGCCGGC
AGTTTCGCTG CGGCGGCAAA AATAGCCTCG GCGGCCGTGG TGAGCATCAA CACCAGCAAG
GCCGCCGTCA AAAACCCGCA AATGAACGAC CCCTGGTTCC GGTTTTTCTT TGGCGACCAG
AATCCGGGCG AAGCCCAGGC CGGACTGGGC AGCGGCGTGA TCGTCAGCGG CAGCGGCTAC
ATCCTGACCA ACAACCATGT GGTTGAAGGC GCCGACGAGA TCGAGGTGGT CCTCAACGAC
ACCCGCAAGG CCAAGGCCAA GGTGATTGGC ACCGATCCCG ACACCGACCT GGCGATTGTC
AAGATCGAGC TGGACAAGCT GCCCGTCATC GTGCTGGGCA ACTCGGACGC GCTGCAGGTG
GGCGATCCGG TGCTGGCCAT CGGCAACCCG TTTGGCGTCG GCCAGACCGT GACCGGCGGC
ATCGTGAGCG CGCTGGGACG CAACCAGCTG GGCATCAACA CCTTCGAGAA CTTCATCCAG
ACCGATGCGG CCATCAACCC AGGCAACTCG GGCGGCGCGC TGGTCGATGT GAACGGCAAC
CTGCTGGGCA TCAACACGGC GATTTACTCC CGCTCGGGTG GCTCCATGGG CATTGGTTTT
GCCATTCCCG TTTCGACCGC CAAGCAGGTG CTCGAAGGCA TCGTGAAAGA TGGCCAGGTC
ACGCGCGGCT GGATTGGCGT CGAACCGCAA GAACTCAACG CCGAACTGAT CGAAGCCTTC
AAGCTCAAAC CGGAGGCGGC CAAGGCGGGC GGCGTCATCA TCACCGGCGT GCTGCAAAAC
GGCCCGGCCG CCCAGGGCGG GATCCGGCCC GGCGACGTGA TCACGGCGGT CAATGGCCAG
CCAGTCGGCA ATGTGAGCCA GTTGCTGACG GCCGTGGCCG CACTCAAGCC CGGCGTCCCC
GCCCCGATGA CGGTGCTGCG CGACAATGGC CCGGTCGAGA TTGCGGTGAC GCCCGGCAAG
CGCGAGCGGC CCCGGGTTCA GCGCTGA
 
Protein sequence
MKRTWLLFSQ TVTILVAAYF VVATLQPQWL NKRTSLGGVS VIEAPSSSVP RAIGSSSPAG 
SFAAAAKIAS AAVVSINTSK AAVKNPQMND PWFRFFFGDQ NPGEAQAGLG SGVIVSGSGY
ILTNNHVVEG ADEIEVVLND TRKAKAKVIG TDPDTDLAIV KIELDKLPVI VLGNSDALQV
GDPVLAIGNP FGVGQTVTGG IVSALGRNQL GINTFENFIQ TDAAINPGNS GGALVDVNGN
LLGINTAIYS RSGGSMGIGF AIPVSTAKQV LEGIVKDGQV TRGWIGVEPQ ELNAELIEAF
KLKPEAAKAG GVIITGVLQN GPAAQGGIRP GDVITAVNGQ PVGNVSQLLT AVAALKPGVP
APMTVLRDNG PVEIAVTPGK RERPRVQR