| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0708 |
|---|
| Symbol | |
|---|
| ID | 4687521 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 750462 |
|---|
| End bp | 751265 |
|---|
| Gene Length | 804 bp |
|---|
| Protein Length | 267 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 639833702 |
|---|
| Product | Sec-independent protein translocase, TatC subunit |
|---|
| Protein accession | YP_980948 |
|---|
| Protein GI | 121603619 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0805] Sec-independent protein secretion pathway component TatC |
|---|
| TIGRFAM ID | [TIGR00945] Twin arginine targeting (Tat) protein translocase TatC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.216103 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.654864 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGATC CCAACTCCCC CGGCGGCGAC AAGCCCGACG AACTCGCAGG CACCGAGCAG
CCCTTTGTGC AGCACCTCAT GGAGTTGCGC GACCGGCTGA TCAAGGCCGT GATCGCCATT
GGCGTGGCGG CCGCCCTGCT GGCGTTTTTC CCCGGTCCTG GCGCGCTGTA CGACCTGATG
GCCGCGCCGC TGATCGCCAG CCTGCCCAAG GGTGCGACCC TGATCGCCAC CAACGTGATT
TCGCCATTCG TCGTGCCCAT CAAGATACTC TTCATGGCCG CCTTCATGAT TGCGCTGCCG
GTGGTGTTGT ATCAGGTCTG GGCTTTTGTC GCGCCCGGCC TGTATTCGCA TGAGAAGAAA
CTGGTCATGC CGCTGGTCGT GTCCAGCACG CTGCTGTTTT TTTTCGGCGT GGCGTTTTGT
TATTACGTTG TCTTTGGCCA GGTGTTCAGC TTTATCCAGA GCTTTGCGCC CAAGTCGATC
ACCGCCGCGC CTGACATCGA GGAATACCTG AACTTCGTTC TCGGCATGTT CCTGGCCTTC
GGTCTGGCCT TTGAAGTGCC GGTTGCGGTA ATCCTGCTGG TCCGCATGGG CGTTCTCAGC
GTGGCCCAGT TGCGCCAGTA CCGGGGCTAC TTCTGGGTGA TTGCCGCCAT TGGCACCGCG
CTGGTCACGC CGCCCGATGC GGGTTCGATG ATCATGCTGC TGATGGTGGT CGGCGGGCTG
TATGAAGTGG GCATCCTGGC TGCGCAGATG TTCGTCAAGA GCACCAAGGC ACCCGATACC
GACACCGAAG CGGCCAAACC CTGA
|
|---|
| Protein sequence | MSDPNSPGGD KPDELAGTEQ PFVQHLMELR DRLIKAVIAI GVAAALLAFF PGPGALYDLM
AAPLIASLPK GATLIATNVI SPFVVPIKIL FMAAFMIALP VVLYQVWAFV APGLYSHEKK
LVMPLVVSST LLFFFGVAFC YYVVFGQVFS FIQSFAPKSI TAAPDIEEYL NFVLGMFLAF
GLAFEVPVAV ILLVRMGVLS VAQLRQYRGY FWVIAAIGTA LVTPPDAGSM IMLLMVVGGL
YEVGILAAQM FVKSTKAPDT DTEAAKP
|
|---|
| |