| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0684 |
|---|
| Symbol | gltD |
|---|
| ID | 4686808 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 732641 |
|---|
| End bp | 734107 |
|---|
| Gene Length | 1467 bp |
|---|
| Protein Length | 488 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639833678 |
|---|
| Product | glutamate synthase subunit beta |
|---|
| Protein accession | YP_980924 |
|---|
| Protein GI | 121603595 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
|---|
| TIGRFAM ID | [TIGR01317] glutamate synthases, NADH/NADPH, small subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.874899 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGAAAAA TCACCGGCTT CATGGAATAC GAGCGCATCG AGGAGGGCTA CAAGCCCGTC
CCGGAACGCC TGAAGAACTA CAAGGAATTT GTCATCGGCC TGGACGACAA GCAGGCTAAT
CTGCAGGCCG CGCGCTGCAT GGACTGCGGC ACGCCGTTTT GCAACAGCGG CTGCCCGGTC
AACAACATCA TTCCCGACTT CAACGACATG GTGTTCCGGA GCGACTGGAA AAACGCGATT
GACACGCTGC ACAGCACCAA TAATTTCCCG GAGTTCACCG GCCGCATCTG CCCCGCGCCC
TGCGAGGCGG CCTGCACGCT CAATGTGAAC GACGATGCGG TGGGCATCAA GTCCATCGAG
CACGCGATCA TCGACCGCGC CTGGTCCGAG GGCTGGGTCA AGCCCCGTCC CGCCAAGCAC
AAGACTGGCA AGAAGGTTGC TGTCGTCGGT TCCGGCCCCG CCGGCATGGC CGCCGCCCAG
CAACTGGCGC GCGTCGGCCA CGACGTGACG CTGTTCGAGA AGAATGACCG CGTCGGCGGC
CTGCTGCGCT ACGGCATTCC CGACTTCAAG ATGGAAAAAA TCCACATCGA CCGCCGCGTC
GAACAGATGC AGGCCGAGGG CGTGGTGTTT CGCACCGGCG TCATGGTCGG CAGCCTGCCC
AAGGGCTCGA AAGTTACCAA CTGGGCCAAG GAAAGCATTA GCCCCGAGCA GTTGCAAAAG
GATTTCGATG CCGTGGTCCT GACCGGCGGC GCCGAGCAGT CGCGCGACTT GCCGGTTCCC
GGCCGCGAAC TGGACGGCGT GCATTTCGCC ATGGAGTTCC TGCCGCAGCA AAACAAGGTC
AATGCCGGCG ACAAGGTCAA GGGCCAGTTG CGCGCCGAAG GCAAGCACGT CATCGTGATT
GGCGGCGGCG ATACCGGCTC GGACTGCGTT GGCACCAGCA ACCGCCACGG CGCGGCCAGC
GTCACCCAGT TCGAGTTGAT GCCCCAGCCC CCGGTCGAGG AAAACCGGCC CATGACCTGG
CCCTACTGGC CAATCAAGCT GCGCACTTCT TCGTCCCACG AAGAAGGCTG CGAGCGCGAG
TTCGCCATCT CCACCAAGGA GCTGATCGGC GAAAAAGGCA AGGTCACCGG TCTGAAAACC
GTCCGCGTCG AATGGAAGGA CGGCAAGATG GTCGAAGTGC CGGGTTCGGA GCAGATCCTC
AAGGCCGACC TGGTGCTGCT GGCCATGGGC TTTGTCTCGC CGGTGGCTTC GGTGCTGGAA
GCCTTCGGCG TTGAAAAGGA CAACCGCGGC AATGCCAGGG CAGGCACCGA CTTCATCGGC
GGCTATGCGA CGAACGTCCC CAAGGTGTTT GCGGCAGGCG ATATCCGGCG CGGCCAGAGC
CTGGTGGTGT GGGCGATTCG CGAAGGCCGG CAGGCCGCGC GGTCGGTCGA TGAGTTCCTG
ATGGGCTACA GCGACCTGCC GCGTTAA
|
|---|
| Protein sequence | MGKITGFMEY ERIEEGYKPV PERLKNYKEF VIGLDDKQAN LQAARCMDCG TPFCNSGCPV
NNIIPDFNDM VFRSDWKNAI DTLHSTNNFP EFTGRICPAP CEAACTLNVN DDAVGIKSIE
HAIIDRAWSE GWVKPRPAKH KTGKKVAVVG SGPAGMAAAQ QLARVGHDVT LFEKNDRVGG
LLRYGIPDFK MEKIHIDRRV EQMQAEGVVF RTGVMVGSLP KGSKVTNWAK ESISPEQLQK
DFDAVVLTGG AEQSRDLPVP GRELDGVHFA MEFLPQQNKV NAGDKVKGQL RAEGKHVIVI
GGGDTGSDCV GTSNRHGAAS VTQFELMPQP PVEENRPMTW PYWPIKLRTS SSHEEGCERE
FAISTKELIG EKGKVTGLKT VRVEWKDGKM VEVPGSEQIL KADLVLLAMG FVSPVASVLE
AFGVEKDNRG NARAGTDFIG GYATNVPKVF AAGDIRRGQS LVVWAIREGR QAARSVDEFL
MGYSDLPR
|
|---|
| |