| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0681 |
|---|
| Symbol | |
|---|
| ID | 4689745 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 725613 |
|---|
| End bp | 726761 |
|---|
| Gene Length | 1149 bp |
|---|
| Protein Length | 382 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639833675 |
|---|
| Product | extracellular ligand-binding receptor |
|---|
| Protein accession | YP_980921 |
|---|
| Protein GI | 121603592 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.35117 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.336917 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAATC GTCGTCAGTC GATCCTGAAG CTTGTTTCGG CCGCTGCTTT GATTGCCAGT
CCCGCCCTTG GGGCGCAAAC CCTTAAAACC AGCCGAAAAG TGACTCTTGG CCAGTCGGTG
CCCCTCACGG GTGCGGCTGA CCAGATTGGC CTGGCTTACC TGAATGGTGC AAAGATTTAC
TTCGATGCCC TCAATGCCAA CAACGGGGTA GGCGGCTACA GCATTGCGGT CAAGGCGCTT
GACGACGGGT ACGACCCCGC GAAGGCGGCA GCCAATGCCA AAAAGCTGAT CAGTGAAGGG
GTTGATGCCC TGTTCGGCTT TGCAGGCACC GCCAGCTGTG ACGCGGCTTA TGCCGTGGCC
AAATCTGCGG ACACCCTGTT TTTTGCACCT TTTGCCGCAT CGGACACGCT TCACGATCCT
GCGCTTGTCA ATGTGTTTCA TGTCCGTCCG GCGCTGGCTG ACGAGGCTTA TAAAGTGGCG
CGCCACTGTG CAACCCTCAA TCAGGAGCGT ATTGCCGTGT TTGCCGAGGA CGATGCCATG
GGGCGCGCCG GCCTGGCTGC CGTTAACCAG GCACTGGTTG ACCTGAAACG ACCGCCGCTT
GTGGCCAGCG CCTTGTCACC CATCAACAGC GACAAGGTGG ATGCGGCAGT TGCCCAGATC
GTGAAAGCCC AGCCCCAGGC CATCATTTTG GCGAGCCTTT TCAATTCATC GGCGGCCTTC
ATCCGAAAAA TGAGGCAGGC CGGCTTCGGC GGCCAGTTCC TGGCTTTTTC CGTCGTGGGC
ATCGATCCCT TGTTCAGTGC GCTGGGCAAG GAAATTGGCG GCATCGTTGT TTCCCAGGTG
GTGCCTTCTC CGCGCAGCAC CGCCATGCCG CTCATCAAGG AATACCTGAA TGTGCTGAAC
CAGACCGACC AGGCGCCCAG CTATGAAAGC GTCGAAGGCT ATGTTGCGGC CCGATGCTTT
GCCCAGGGCG TGCGCCTGAG CATTGCGGGT GGCGGCAATC CAGATCGCGC GGGCTTGCAA
AAAGCCTTTA ATTCCATGAC GGACTATGAC GTGGGCGGCT TTCGCGTCAA CCTGCGGCCA
AAAAAATACG AATCGGTTCG CGCCATTGAC CTTGTTACCA TCACGCCGGA CGGAAAAATC
GTCCGCTAG
|
|---|
| Protein sequence | MFNRRQSILK LVSAAALIAS PALGAQTLKT SRKVTLGQSV PLTGAADQIG LAYLNGAKIY
FDALNANNGV GGYSIAVKAL DDGYDPAKAA ANAKKLISEG VDALFGFAGT ASCDAAYAVA
KSADTLFFAP FAASDTLHDP ALVNVFHVRP ALADEAYKVA RHCATLNQER IAVFAEDDAM
GRAGLAAVNQ ALVDLKRPPL VASALSPINS DKVDAAVAQI VKAQPQAIIL ASLFNSSAAF
IRKMRQAGFG GQFLAFSVVG IDPLFSALGK EIGGIVVSQV VPSPRSTAMP LIKEYLNVLN
QTDQAPSYES VEGYVAARCF AQGVRLSIAG GGNPDRAGLQ KAFNSMTDYD VGGFRVNLRP
KKYESVRAID LVTITPDGKI VR
|
|---|
| |