Gene Pnap_0676 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_0676 
Symbol 
ID4689651 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp718219 
End bp720357 
Gene Length2139 bp 
Protein Length712 aa 
Translation table11 
GC content55% 
IMG OID639833670 
Producttype IV pilus secretin PilQ 
Protein accessionYP_980916 
Protein GI121603587 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4796] Type II secretory pathway, component HofQ 
TIGRFAM ID[TIGR02515] type IV pilus secretin (or competence protein) PilQ 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0513827 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACAAGC AGATAGCGGG ATTGGCAGCG GAGGCGAGAG GGCAAGAGAG TCTGCCGCGT 
TTGCTTGGAC GTGTAGTGCG CCGTGCATTA TTCAGTGTGA TGGTCGTGGC CAGTGCCATA
CCCCTGCTGG CAAGAGCAGA AAATTCAATC CAGTCTGTTT CAGGCTCGGT GCAGGGCGGT
TCGGAAGTGA TCCGGATCGA ACTGGCCGAA CCTCTGGCAG AAGTTCCAAC GGGTTTCAGC
ATTCAGGCGC CTGCCCGTAT CGCACTCGAC TTTCAAGGCA TCAGCAATTC CCTGGGGCGG
TCAGCCATTG AAATCAACCT GGGTAACATG CGTTCAGCCA ATGTGATCCA GGCCGGTGAA
CGCACCCGGG TGGTGCTCAA TCTGAAGACA CCTACCTCCT ACAAGGCCGA GATACAAGGC
AAGTCGCTGC TGATCATTCT GGATTCCCAG GCCGTGGCAG CACCTTCCGT GGTGGCTGCG
CCTGTATTTG CCGAAAGCCG TAACCGTGAC ACGCTTCCGT TGAAGGACAT CGATTTTCGC
CGTGGCCCCG ACAATTCCGG TCGGATTGTG GTGGCCCTGC CCAATAATGA AGTTGGTGTT
GATATTCGCC AGCAGGGTAA AACCGTGGTG GTGGAGTTCC TGAAAACTGC ATTGCCCGAA
GGCCTGCGCC GGCGTCTGGA TGTCACTGAT TTCGGAACAC CGGTCCAAAC TGTTACCACC
ACCCAGGTGG GCGACAAGGT TCGCATGGTG GTCGAGCCCA CGGGTCAGTG GGAGCAAAGT
GCTTACCAGA GCGACAATCA GTTCGTGCTG GAAGTGCGTG CGCAAAAGGT TGACCCTGGC
AAGTTGACCC AAGGCATAGG CTTCAACGGC GAAAAGCTGT CGCTGAATTT CCAGAACATT
GAAATCCGGT CGCTGCTGCA GGTCATTGCC GACTTCACCA ATTTCAACGT CGTCACCTCG
GATACCGTAA CCGGGTCTGT GACCTTGCGC CTGAAAGACG TTCCATGGGA CCAGGCCCTG
GATATTATTT TGCAGGCCAA GGGTTTGGGA ATGCGCAAGA CTGGCAATGT TTTGCTGATT
GCCCCCAAAG ACGAACTGGC CGCCAAGGAC AAGCAGGAAC TGGAGGCTCG CGTTGCCATA
CAGAATCTTG AAGCGGTGCG TACGCAATCA TTCCAGATCA ACTATGCCAA AGCCAGTGAA
ATTGCAGTGC AGATATCTGC TGGCGGTACT GGCGCGACAA CGGCCCGGAT ATTGTCCAAT
CGAGGAAGTG TCATTGCCGA GCCGCGCACG AATCAGTTGT TCGTGACGGA CATTCCTTCG
CGGCTGGAAC AGGTGCAAAA TTTTATTGCC AAGCTTGATA TTGCGGTTCG ACAGGTGTTG
ATTGAGGCGC GCATCGTTGA AGCTTCGGAT ACTTTTGGCC GGTCTCTGGG CGTGAGATTG
GGCGGTGGGA CGATTGGTGC AGCCGGCGCC CTGACAAGGG GTAATACCAA TGTCTCATTG
GGCACCAATT ATGGTGCGAC GGTTGCGGAT ACGAGCGGCA ATTTTGTCAG CTTCCCCGCT
TCAACCCTGG GTGTTGCGAA TGCCGCCTCC TCATTCGCAG TGTCGATTTT CAATGCATCG
GCGAACCGCT TCTTGAACCT TGAACTGTCG GCACTGGAGG CAGACGGCAA GGGCAAGATT
GTTTCCAGTC CGCGCGTTGT CACGGCAGAC CAGACCAAGG CGCTGATTGA GCAGGGGACC
GAGTTTCCGT ACCAGACCGC CACCTCCAGC GGCGCCACGT CCTTGGCATT CCGCAAGGCC
AATCTGAAAC TGGAAGTCAC GCCGCAAATC ACGCCAGAAG GCAACATCAT TCTTGACCTG
GACGTGAACA AGGACAGCCG CGGCGAAACC ACCGCAGCCG GTATTGCCAT CGACACCAAG
CATATTCAGA CCCAGGTGCT GGTTGAAAAT GGCGGTACGG TCGTGATTGG CGGAATCTTT
ACGCTTGAAG AAACCAATAA TGAAGTCAAA GTTCCATTGC TTGGCGATGT GCCTTACCTT
GGTAACCTGT TCAAGAGCCG GGAGCGCACG TCCAGAAAGC AGGAAATGCT GGTATTTATT
ACACCGAAGA TGATTACGGA CCGGGCTTCT GCGCGGTAA
 
Protein sequence
MNKQIAGLAA EARGQESLPR LLGRVVRRAL FSVMVVASAI PLLARAENSI QSVSGSVQGG 
SEVIRIELAE PLAEVPTGFS IQAPARIALD FQGISNSLGR SAIEINLGNM RSANVIQAGE
RTRVVLNLKT PTSYKAEIQG KSLLIILDSQ AVAAPSVVAA PVFAESRNRD TLPLKDIDFR
RGPDNSGRIV VALPNNEVGV DIRQQGKTVV VEFLKTALPE GLRRRLDVTD FGTPVQTVTT
TQVGDKVRMV VEPTGQWEQS AYQSDNQFVL EVRAQKVDPG KLTQGIGFNG EKLSLNFQNI
EIRSLLQVIA DFTNFNVVTS DTVTGSVTLR LKDVPWDQAL DIILQAKGLG MRKTGNVLLI
APKDELAAKD KQELEARVAI QNLEAVRTQS FQINYAKASE IAVQISAGGT GATTARILSN
RGSVIAEPRT NQLFVTDIPS RLEQVQNFIA KLDIAVRQVL IEARIVEASD TFGRSLGVRL
GGGTIGAAGA LTRGNTNVSL GTNYGATVAD TSGNFVSFPA STLGVANAAS SFAVSIFNAS
ANRFLNLELS ALEADGKGKI VSSPRVVTAD QTKALIEQGT EFPYQTATSS GATSLAFRKA
NLKLEVTPQI TPEGNIILDL DVNKDSRGET TAAGIAIDTK HIQTQVLVEN GGTVVIGGIF
TLEETNNEVK VPLLGDVPYL GNLFKSRERT SRKQEMLVFI TPKMITDRAS AR