Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_0676 |
Symbol | |
ID | 4689651 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | + |
Start bp | 718219 |
End bp | 720357 |
Gene Length | 2139 bp |
Protein Length | 712 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 639833670 |
Product | type IV pilus secretin PilQ |
Protein accession | YP_980916 |
Protein GI | 121603587 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4796] Type II secretory pathway, component HofQ |
TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.0513827 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAACAAGC AGATAGCGGG ATTGGCAGCG GAGGCGAGAG GGCAAGAGAG TCTGCCGCGT TTGCTTGGAC GTGTAGTGCG CCGTGCATTA TTCAGTGTGA TGGTCGTGGC CAGTGCCATA CCCCTGCTGG CAAGAGCAGA AAATTCAATC CAGTCTGTTT CAGGCTCGGT GCAGGGCGGT TCGGAAGTGA TCCGGATCGA ACTGGCCGAA CCTCTGGCAG AAGTTCCAAC GGGTTTCAGC ATTCAGGCGC CTGCCCGTAT CGCACTCGAC TTTCAAGGCA TCAGCAATTC CCTGGGGCGG TCAGCCATTG AAATCAACCT GGGTAACATG CGTTCAGCCA ATGTGATCCA GGCCGGTGAA CGCACCCGGG TGGTGCTCAA TCTGAAGACA CCTACCTCCT ACAAGGCCGA GATACAAGGC AAGTCGCTGC TGATCATTCT GGATTCCCAG GCCGTGGCAG CACCTTCCGT GGTGGCTGCG CCTGTATTTG CCGAAAGCCG TAACCGTGAC ACGCTTCCGT TGAAGGACAT CGATTTTCGC CGTGGCCCCG ACAATTCCGG TCGGATTGTG GTGGCCCTGC CCAATAATGA AGTTGGTGTT GATATTCGCC AGCAGGGTAA AACCGTGGTG GTGGAGTTCC TGAAAACTGC ATTGCCCGAA GGCCTGCGCC GGCGTCTGGA TGTCACTGAT TTCGGAACAC CGGTCCAAAC TGTTACCACC ACCCAGGTGG GCGACAAGGT TCGCATGGTG GTCGAGCCCA CGGGTCAGTG GGAGCAAAGT GCTTACCAGA GCGACAATCA GTTCGTGCTG GAAGTGCGTG CGCAAAAGGT TGACCCTGGC AAGTTGACCC AAGGCATAGG CTTCAACGGC GAAAAGCTGT CGCTGAATTT CCAGAACATT GAAATCCGGT CGCTGCTGCA GGTCATTGCC GACTTCACCA ATTTCAACGT CGTCACCTCG GATACCGTAA CCGGGTCTGT GACCTTGCGC CTGAAAGACG TTCCATGGGA CCAGGCCCTG GATATTATTT TGCAGGCCAA GGGTTTGGGA ATGCGCAAGA CTGGCAATGT TTTGCTGATT GCCCCCAAAG ACGAACTGGC CGCCAAGGAC AAGCAGGAAC TGGAGGCTCG CGTTGCCATA CAGAATCTTG AAGCGGTGCG TACGCAATCA TTCCAGATCA ACTATGCCAA AGCCAGTGAA ATTGCAGTGC AGATATCTGC TGGCGGTACT GGCGCGACAA CGGCCCGGAT ATTGTCCAAT CGAGGAAGTG TCATTGCCGA GCCGCGCACG AATCAGTTGT TCGTGACGGA CATTCCTTCG CGGCTGGAAC AGGTGCAAAA TTTTATTGCC AAGCTTGATA TTGCGGTTCG ACAGGTGTTG ATTGAGGCGC GCATCGTTGA AGCTTCGGAT ACTTTTGGCC GGTCTCTGGG CGTGAGATTG GGCGGTGGGA CGATTGGTGC AGCCGGCGCC CTGACAAGGG GTAATACCAA TGTCTCATTG GGCACCAATT ATGGTGCGAC GGTTGCGGAT ACGAGCGGCA ATTTTGTCAG CTTCCCCGCT TCAACCCTGG GTGTTGCGAA TGCCGCCTCC TCATTCGCAG TGTCGATTTT CAATGCATCG GCGAACCGCT TCTTGAACCT TGAACTGTCG GCACTGGAGG CAGACGGCAA GGGCAAGATT GTTTCCAGTC CGCGCGTTGT CACGGCAGAC CAGACCAAGG CGCTGATTGA GCAGGGGACC GAGTTTCCGT ACCAGACCGC CACCTCCAGC GGCGCCACGT CCTTGGCATT CCGCAAGGCC AATCTGAAAC TGGAAGTCAC GCCGCAAATC ACGCCAGAAG GCAACATCAT TCTTGACCTG GACGTGAACA AGGACAGCCG CGGCGAAACC ACCGCAGCCG GTATTGCCAT CGACACCAAG CATATTCAGA CCCAGGTGCT GGTTGAAAAT GGCGGTACGG TCGTGATTGG CGGAATCTTT ACGCTTGAAG AAACCAATAA TGAAGTCAAA GTTCCATTGC TTGGCGATGT GCCTTACCTT GGTAACCTGT TCAAGAGCCG GGAGCGCACG TCCAGAAAGC AGGAAATGCT GGTATTTATT ACACCGAAGA TGATTACGGA CCGGGCTTCT GCGCGGTAA
|
Protein sequence | MNKQIAGLAA EARGQESLPR LLGRVVRRAL FSVMVVASAI PLLARAENSI QSVSGSVQGG SEVIRIELAE PLAEVPTGFS IQAPARIALD FQGISNSLGR SAIEINLGNM RSANVIQAGE RTRVVLNLKT PTSYKAEIQG KSLLIILDSQ AVAAPSVVAA PVFAESRNRD TLPLKDIDFR RGPDNSGRIV VALPNNEVGV DIRQQGKTVV VEFLKTALPE GLRRRLDVTD FGTPVQTVTT TQVGDKVRMV VEPTGQWEQS AYQSDNQFVL EVRAQKVDPG KLTQGIGFNG EKLSLNFQNI EIRSLLQVIA DFTNFNVVTS DTVTGSVTLR LKDVPWDQAL DIILQAKGLG MRKTGNVLLI APKDELAAKD KQELEARVAI QNLEAVRTQS FQINYAKASE IAVQISAGGT GATTARILSN RGSVIAEPRT NQLFVTDIPS RLEQVQNFIA KLDIAVRQVL IEARIVEASD TFGRSLGVRL GGGTIGAAGA LTRGNTNVSL GTNYGATVAD TSGNFVSFPA STLGVANAAS SFAVSIFNAS ANRFLNLELS ALEADGKGKI VSSPRVVTAD QTKALIEQGT EFPYQTATSS GATSLAFRKA NLKLEVTPQI TPEGNIILDL DVNKDSRGET TAAGIAIDTK HIQTQVLVEN GGTVVIGGIF TLEETNNEVK VPLLGDVPYL GNLFKSRERT SRKQEMLVFI TPKMITDRAS AR
|
| |