| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0673 |
|---|
| Symbol | |
|---|
| ID | 4686747 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 716487 |
|---|
| End bp | 716978 |
|---|
| Gene Length | 492 bp |
|---|
| Protein Length | 163 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 639833667 |
|---|
| Product | fimbrial assembly family protein |
|---|
| Protein accession | YP_980913 |
|---|
| Protein GI | 121603584 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3166] Tfp pilus assembly protein PilN |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.087179 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTATTCCT GGTACTCAGC CCAAATTGAA AGCCAGCGAG GAAGAAATAC CTTTTTGCAA
TCAGAAATTT CCCGCCTGGA TGAGCAGATC AAGGATATTG CGACCTTGCA GGCGGAGATT
ACATCGCTCA AGGCGCGTCA GACCGCTGTC GAGGATCTGC AGGGGAACCG CAATCTCCCG
GTGTATTTGT TGAGCGAACT TGTCAAGCAA CTGCCTGACG GCGTGTACAT CAACAGCTTG
AAGCAAGAGA ACCAGACCGT CCTAATGACC GGTATTGCCC AGTCGAACGA ACGTGTTTCA
GAGTTGCTTC GTAATTTCTC AAACAACAGC CCATGGTTGG CCAAACCGGA GTTGGTGGAA
ATTACGGCTG GTACGGTGAC ATTAAGCCAG CGCGACCAGC GGCGCGTTTC CAATTTTTCA
ATGCGCGTGG AGATCAAACG GGCCAGTGAT CAAAAAGAAA CAGCGTCTTC TGCTGCTACG
GCCAAGATTT GA
|
|---|
| Protein sequence | MYSWYSAQIE SQRGRNTFLQ SEISRLDEQI KDIATLQAEI TSLKARQTAV EDLQGNRNLP
VYLLSELVKQ LPDGVYINSL KQENQTVLMT GIAQSNERVS ELLRNFSNNS PWLAKPELVE
ITAGTVTLSQ RDQRRVSNFS MRVEIKRASD QKETASSAAT AKI
|
|---|
| |