Gene Pnap_0672 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_0672 
Symbol 
ID4688931 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp715297 
End bp716376 
Gene Length1080 bp 
Protein Length359 aa 
Translation table11 
GC content53% 
IMG OID639833666 
Producttype IV pilus assembly protein PilM 
Protein accessionYP_980912 
Protein GI121603583 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4972] Tfp pilus assembly protein, ATPase PilM 
TIGRFAM ID[TIGR01175] type IV pilus assembly protein PilM 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.0670531 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGATCTCAC TGGGATCGTT ATTCAACCGT CAACAACCCC CTTTGCTGGG TGTCGATATC 
AGTTCGTCCA GTGTCATGCT GGTCGAGGTG AGCCGCGACA AGGCCGGCAA CCTGGTTCTT
GACCGCTGCG CCATTGAACC CCTGGAAACA GGATGGGTCA CCGATGGCAA CATCGAAAAA
TTCGACGAAG TTGCTGAAGT GCTTCGACGT GTGGTGAAAA AGAGCGGTAC ACGTACCAAA
AACGTGGCCA TGGCGTTGCC GCCTTCGGCC GTCATCAGTA AAAAAATCAT CCTGCCGGGA
GGGCTTAGTG AGGCCGAGCT TGAAATTCAG GTTGAATCCG AAGCCAATAA ATACATCCCA
TTTTCACTCG ATGAAGTCAG TCTTGATTTT TGTGTGCTGG GCCCCAGCGC AACTTCCAGT
GGAGATGTTG AGGTACTGAT TGCTGCTTCG CGAAAAGAAA AAGTCCAGGA CAGGCAGGGT
TTGGCTGAAG CTGCGGGACT CAAGCCCGTC GTGGTGGATG TCGAATCGTA TGCTTCGCGC
TTTGCCACGG CACGGCTGAT CGAAAACATG CCCAACAAAG GTGTGGACAC CATGGTTGCA
TTGTTTGAGA TCGGTTCGCT GACCACCAGC ATGCAAGTCA TCCGTAATGA TGAGGTTCTG
TACGAGCGCG ATCAGGCATT TGGCGGTGCG CAACTGACCC AGTTGATCGT CAGGCAGTAC
GGATTCTCGC TTGAAGAGGC AGAAACCAAA AAACGTGGCA GCGAACTTCC TGAAGACTAC
GAGTCGGGGG TTCTGAAGCC GTTTGTCGAA AACATGACGC AGGAAATTGG TCGTGCGCTC
CAGTTCTTCT TTACCAGCAC ACCCTATAAC CGGGTCGATT ACGTGATGCT GGCAGGCGGT
TCATCTTCAT TGCAGGGACT GACGGAGTCG GTAACGAAGC AGACATCCTT TGCCTGCCTG
CTGGTGAATC CTTTTGATGG CATGGAAATT GGCAGCGGCG TCATCGAAAA AAGAATGCGG
CGTGAAGCCT CCTGTTACCT GACTGCCTGT GGCCTGGCTT TGCGAAGGTT TGTACAGTGA
 
Protein sequence
MISLGSLFNR QQPPLLGVDI SSSSVMLVEV SRDKAGNLVL DRCAIEPLET GWVTDGNIEK 
FDEVAEVLRR VVKKSGTRTK NVAMALPPSA VISKKIILPG GLSEAELEIQ VESEANKYIP
FSLDEVSLDF CVLGPSATSS GDVEVLIAAS RKEKVQDRQG LAEAAGLKPV VVDVESYASR
FATARLIENM PNKGVDTMVA LFEIGSLTTS MQVIRNDEVL YERDQAFGGA QLTQLIVRQY
GFSLEEAETK KRGSELPEDY ESGVLKPFVE NMTQEIGRAL QFFFTSTPYN RVDYVMLAGG
SSSLQGLTES VTKQTSFACL LVNPFDGMEI GSGVIEKRMR REASCYLTAC GLALRRFVQ