Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_0672 |
Symbol | |
ID | 4688931 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | + |
Start bp | 715297 |
End bp | 716376 |
Gene Length | 1080 bp |
Protein Length | 359 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 639833666 |
Product | type IV pilus assembly protein PilM |
Protein accession | YP_980912 |
Protein GI | 121603583 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4972] Tfp pilus assembly protein, ATPase PilM |
TIGRFAM ID | [TIGR01175] type IV pilus assembly protein PilM |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.0670531 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGATCTCAC TGGGATCGTT ATTCAACCGT CAACAACCCC CTTTGCTGGG TGTCGATATC AGTTCGTCCA GTGTCATGCT GGTCGAGGTG AGCCGCGACA AGGCCGGCAA CCTGGTTCTT GACCGCTGCG CCATTGAACC CCTGGAAACA GGATGGGTCA CCGATGGCAA CATCGAAAAA TTCGACGAAG TTGCTGAAGT GCTTCGACGT GTGGTGAAAA AGAGCGGTAC ACGTACCAAA AACGTGGCCA TGGCGTTGCC GCCTTCGGCC GTCATCAGTA AAAAAATCAT CCTGCCGGGA GGGCTTAGTG AGGCCGAGCT TGAAATTCAG GTTGAATCCG AAGCCAATAA ATACATCCCA TTTTCACTCG ATGAAGTCAG TCTTGATTTT TGTGTGCTGG GCCCCAGCGC AACTTCCAGT GGAGATGTTG AGGTACTGAT TGCTGCTTCG CGAAAAGAAA AAGTCCAGGA CAGGCAGGGT TTGGCTGAAG CTGCGGGACT CAAGCCCGTC GTGGTGGATG TCGAATCGTA TGCTTCGCGC TTTGCCACGG CACGGCTGAT CGAAAACATG CCCAACAAAG GTGTGGACAC CATGGTTGCA TTGTTTGAGA TCGGTTCGCT GACCACCAGC ATGCAAGTCA TCCGTAATGA TGAGGTTCTG TACGAGCGCG ATCAGGCATT TGGCGGTGCG CAACTGACCC AGTTGATCGT CAGGCAGTAC GGATTCTCGC TTGAAGAGGC AGAAACCAAA AAACGTGGCA GCGAACTTCC TGAAGACTAC GAGTCGGGGG TTCTGAAGCC GTTTGTCGAA AACATGACGC AGGAAATTGG TCGTGCGCTC CAGTTCTTCT TTACCAGCAC ACCCTATAAC CGGGTCGATT ACGTGATGCT GGCAGGCGGT TCATCTTCAT TGCAGGGACT GACGGAGTCG GTAACGAAGC AGACATCCTT TGCCTGCCTG CTGGTGAATC CTTTTGATGG CATGGAAATT GGCAGCGGCG TCATCGAAAA AAGAATGCGG CGTGAAGCCT CCTGTTACCT GACTGCCTGT GGCCTGGCTT TGCGAAGGTT TGTACAGTGA
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Protein sequence | MISLGSLFNR QQPPLLGVDI SSSSVMLVEV SRDKAGNLVL DRCAIEPLET GWVTDGNIEK FDEVAEVLRR VVKKSGTRTK NVAMALPPSA VISKKIILPG GLSEAELEIQ VESEANKYIP FSLDEVSLDF CVLGPSATSS GDVEVLIAAS RKEKVQDRQG LAEAAGLKPV VVDVESYASR FATARLIENM PNKGVDTMVA LFEIGSLTTS MQVIRNDEVL YERDQAFGGA QLTQLIVRQY GFSLEEAETK KRGSELPEDY ESGVLKPFVE NMTQEIGRAL QFFFTSTPYN RVDYVMLAGG SSSLQGLTES VTKQTSFACL LVNPFDGMEI GSGVIEKRMR REASCYLTAC GLALRRFVQ
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