Gene Pnap_0654 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_0654 
Symbol 
ID4688193 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp693791 
End bp694738 
Gene Length948 bp 
Protein Length315 aa 
Translation table11 
GC content62% 
IMG OID639833648 
Producttransaldolase B 
Protein accessionYP_980894 
Protein GI121603565 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0176] Transaldolase 
TIGRFAM ID[TIGR00874] transaldolase 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.581022 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.0202899 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACACAAC TCGACGCCCT GAAACAATTC ACGACCGTGG TGGCTGATAC CGGCGACTTC 
CGGCAGCTGG CCCAGTTCAA GCCGCAAGAT GCGACGACCA ATCCTTCGCT GATCCTCAAG
GCGGTGCAAA AAGCCGATTA CGCGCCGCTG ATGCGGGACA CGGTCGGCCG CTTCAAGGGC
CGGGCGCTCG ATGAAGTCAT GGACCGGCTG CTGGTGCGCT TTGGCTGCGA AATCCTGTCG
ATTATTCCGG GCCGCGTATC GACCGAAGTC GATGCCCGCC TGAGCTTTGA CACCAGCGCC
ACGGTGACGC GCGGCGAACG CCTGATCGAG CTTTACCAGG CCGAAGGCAT TCACATCGAC
CGGGTGCTGA TCAAGGTGGC GGCCACCTGG GAAGGTATCG AGGCGGCCAG GGAACTGGAG
CAGCGCGGCA TCCATACCAA CCTGACGCTG CTGTTTTCGT TCTGCCAGGC GGTGGCTTGC
GGGCAAGCCA GGGTTCAGCT GATTTCCCCG TTCGTGGGCC GGATTTACGA CTGGTACAAA
AAGTCGGCCG GCAGCGGGTG GAACGAAGCC GCGAATGCGG ATGCCAATGA CCCCGGCGTG
AAATCGGTGC GCGAAATCTA CAACCACTAC AAGCACTTCG GCATCGCGAC CGAAGTCATG
GGCGCGAGTT TTCGCAACAT CGGCCAGATC ACGGCGCTGG CCGGTTGCGA CCTGCTGACC
ATCAGCCCCG AGCTGCTGGC CCAGCTGGCC GCCAGCGATG CGCCCCTGGC GCGCGCACTC
GATGCCGACA GCGCGGCAGC GCTTGATTTG CCGGCGAAGA GTTTTGACGA AACCGGCTTT
CGTTACGCCC TCAATGAAGA CGCCATGGCG ACCGAAAAGC TGGCCGAAGG CATTCGCGCT
TTTGCCGCTG ACGCCGTCAA GCTCGAACAG CTGCTTCTGG CGGCATAA
 
Protein sequence
MTQLDALKQF TTVVADTGDF RQLAQFKPQD ATTNPSLILK AVQKADYAPL MRDTVGRFKG 
RALDEVMDRL LVRFGCEILS IIPGRVSTEV DARLSFDTSA TVTRGERLIE LYQAEGIHID
RVLIKVAATW EGIEAARELE QRGIHTNLTL LFSFCQAVAC GQARVQLISP FVGRIYDWYK
KSAGSGWNEA ANADANDPGV KSVREIYNHY KHFGIATEVM GASFRNIGQI TALAGCDLLT
ISPELLAQLA ASDAPLARAL DADSAAALDL PAKSFDETGF RYALNEDAMA TEKLAEGIRA
FAADAVKLEQ LLLAA