| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0644 |
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| Symbol | |
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| ID | 4688043 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 681977 |
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| End bp | 683626 |
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| Gene Length | 1650 bp |
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| Protein Length | 549 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 639833638 |
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| Product | threonine dehydratase |
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| Protein accession | YP_980884 |
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| Protein GI | 121603555 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1171] Threonine dehydratase |
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| TIGRFAM ID | [TIGR01124] threonine ammonia-lyase, biosynthetic, long form |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0883544 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCTCCT CCAAAAAATC CATCCCCGGC GCTGCAGCCA AAGCAGCCGC CACCGTCCCT
CCTAAAGCTT CAGCCAAACC GGCCCACAAG CCTTCGGCCA AAACGCTCAA GCCCGCCGAC
TACCTGAAAA AAATCCTGAC CGCGCGGGTT TATGACGTGG CGGTCGAATC GGCGCTGGAG
CCGGCCAAAA CCTTAAGCCT GCGCCTGAAC AACACCGTGC TGCTCAAGCG CGAGGACCAG
CAGCCGGTGT TCAGCTTCAA GCTGCGCGGC GCCTACAACA AGATGGCCCA CCTGACGCCG
GCGCAGCTCA AAAAGGGCGT GATTTGCGCC TCGGCTGGCA ACCATGCCCA GGGCGTGGCC
ATGAGCGCGC AAAAGCTCGG CACGCGCGCC GTCATCGTCA TGCCGACGAC CACGCCGCAG
CTCAAAATTG ACGCGGTCAA GGGCTGGGGC GGCGAGGTCG TGCTGCACGG CGACAGCTAT
TCGGACGCCT ACACCCACTC GGTGGCCCTG CAAAAAGAAC AGGGCCTGAC CTTCGTGCAT
CCCTTCGACG ACCCGGACGT GATTGCCGGC CAGGGCACGA TTGCCATGGA AATCCTGCGC
CAGCTGCAAA CGCTGGGCTC GCGCCGGCTC GATGCTGTGT TTGTCGCCAT TGGCGGTGGC
GGGCTGATTT CCGGCGTGGC CAACTACATC AAGGCGGTGC GGCCCGAGAT CAAGGTCATC
GGCGTGCAGA TGAACGACTC CGACGCCATG ATGCAGTCGG TGGCGGCAAA AAAACGCGTC
ACCCTTTCCG ACGTGGGCCT GTTCTCGGAC GGCACGGCGG TCAAGCTGGT GGGCGAGGAA
ACCTTCCGCA TCAGCCGCGA ACTGGTCGAT GAATTCATGA CGGTGGACAC CGACGCGGTC
TGCGCCGCCA TCAAGGATAT TTTTGTCGAT ACGCGCAGCA TTGTCGAGCC GGCCGGCGCG
CTGGCCGTGG CCGCCATCAA GCAGTACGTC GCCCGGCACA AGACCAAGGG CGAAACCTAT
GCCGCCATCC TGTGCGGCGC CAACATGAAC TTCGACCGCC TGCGCTTTGT CGCCGAGCGC
GCCGAAGTGG GCGAGGAGCG CGAAGCGCTG TTCGCGGTGA CGATTCCCGA GGAGCGCGGC
AGCTTCCGGC GTTTTTGCGC GCTGATCGAC AAGGCGCCCG GCGGGCCGCG CAGCGTGACC
GAGTTCAACT ACCGCATCAA CGACCAGGCC GTGGCGCATG TGTTTGTCGG CCTGACGACC
TCGGCCAAGG GCGAGAGCAG CAAGATTGCC GCCCAGTTCA CCCGCCACGG CTTCAAGGCG
CTGGACCTGA CGCATGACGA ACTGGCCAAG GAACACATCC GCCACATGGT GGGCGGGCAC
AGCGCGCTGT CCAAAGACGA GCGCCTGCTG CGCTTCATCT TTCCCGAGCG GCCCGGCGCG
CTGATGAAGT TCCTGTCGAG CATGCGGCCG GACTGGAACA TCACCCTGTT CCACTACCGC
AACCAGGGCG CCGACTATGG CCGCATCCTG GTCGGCCTGC AGGTGCCCAA GGCGGACAGC
GGCGCGTTCC AGGAATTCCT GGACACCCTC GGCTACCCCC ATGTGGAAGA AACCGACAAC
CCGGTGTACC GGCTGTTTTT GCAAAGCTGA
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| Protein sequence | MPSSKKSIPG AAAKAAATVP PKASAKPAHK PSAKTLKPAD YLKKILTARV YDVAVESALE
PAKTLSLRLN NTVLLKREDQ QPVFSFKLRG AYNKMAHLTP AQLKKGVICA SAGNHAQGVA
MSAQKLGTRA VIVMPTTTPQ LKIDAVKGWG GEVVLHGDSY SDAYTHSVAL QKEQGLTFVH
PFDDPDVIAG QGTIAMEILR QLQTLGSRRL DAVFVAIGGG GLISGVANYI KAVRPEIKVI
GVQMNDSDAM MQSVAAKKRV TLSDVGLFSD GTAVKLVGEE TFRISRELVD EFMTVDTDAV
CAAIKDIFVD TRSIVEPAGA LAVAAIKQYV ARHKTKGETY AAILCGANMN FDRLRFVAER
AEVGEEREAL FAVTIPEERG SFRRFCALID KAPGGPRSVT EFNYRINDQA VAHVFVGLTT
SAKGESSKIA AQFTRHGFKA LDLTHDELAK EHIRHMVGGH SALSKDERLL RFIFPERPGA
LMKFLSSMRP DWNITLFHYR NQGADYGRIL VGLQVPKADS GAFQEFLDTL GYPHVEETDN
PVYRLFLQS
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