| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0620 |
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| Symbol | |
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| ID | 4686453 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 656373 |
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| End bp | 658334 |
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| Gene Length | 1962 bp |
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| Protein Length | 653 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 639833614 |
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| Product | Fis family GAF modulated sigma54 specific transcriptional regulator |
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| Protein accession | YP_980860 |
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| Protein GI | 121603531 |
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| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAACGT ATCAGCGCGA ACACATCGAC AGGGTCATGC AGACGGTGGC CGGCGGCAGC
GCTGGCACCC CGGACGCGGC TGGCGACAGC CTGATCCACG ACTCATGGCG CCGCTGCGCG
CGCGACTACC GGCTGGACCC GACGCGCATG CAGGACGCCA TCATTTTGCC CAGCCACCGG
CTGCGCGAGC ACCAGGACCG GATGGACGAG TTTTTGCAGA TCGCGCGCAG CGGCATGCAG
GCGCTCTACC AGCATGTGGC CGGCCTGGGC TATGTGGTGC TGCTGACCGA TGCGCGCGGC
GTCACCGTCG ATTTTCTGGG CGACCTGAAC AGCGACCATT CGCTGCGCCG CGCCGGCCTG
TACCTGGGGT CGGACTGGAG CGAGCCGCTG GCCGGCACTT GCGGCGTGGG CACCTGCATC
AGCACGGGCC AAGCGCTCAC GGTGCACCAG GGCGACCATT TCGACGCCAC CCACATCCCG
CTGACCTGCA CCACCGCGCC GGTGTTCGAC GGGCGCGGCC AGCTCAACGC GGTGCTCGAC
ATCTCGGCGC TGCGCTCGCC GCAGAGCAAG GAGAGCCAGC ACATGGCGCT GCAGATGGTG
CAGATTTACG CCCATCACAT TGAAAACGCC AGCTTCCTGC GCCAGTTCCG CCATGACTGG
GTGCTGCGCC TGTCGCCCTC GCCGCAGTTC CTGGAGGTCA ACCCCGACTA CCTGCTGGCG
CTGGACGCGG CCGGCCGGGT CATCGGCCAC AACCGCCGCG CGCAACTGCT GCTGCAGGAC
TGCGTGGCCG GGCCGCTGAT CGGCGCGGCG TTCGAGCGCC TGTTCAACGC CCGGCTCGGC
GACCTGGGCC GCTTTTTGCA CAGCTGCCCG GCGGACCGCC GCGCCATCAC GCTGGCCGGC
TCCAGCCAGC TGCTGTTCCT GCTGGCCTCG CCTGCGCCCG CCGCCGCGCG CCCTGCGCCA
TCGGCCGCCG TTGAACCCGT GCCGGCGCCG CTGGCCGCGC TGTGCGGGGG CGACGCGGCG
CTGGCGCGGC AGATCGCGCG GGCGGCGCGC TTCGTCAATT CGCCCATCGG GCTGCTGCTG
ACCGGCGAGA CCGGCAGCGG CAAGGAGTTC TTCGCCAAGG CGCTGCACGC CAGCGGCGAG
CGGCGCGGCC GGCCTTTCGT GGCGGTGAAC TGCGCGGCGA TTCCCGAGGC GCTGGCCGAG
AGCGAGCTGT TCGGCTACCT GCCGGGCAGC TTCTCGGGCG CGGGCAGCCG GGCCAAACGC
GGGCTGGTGC AGGAGGCCGA CGGCGGCACG CTGTTCCTCG ACGAGATCGG CGACATGACG
CTGGCATTGC AGGCGCGGCT GCTGCGCGTG CTGGCCGAGC GCGAAGTGCT GCCCGTGGGC
GCGACGCGGC CGGTGCCGGT GAACATCCGC GTGATGGCCG CCACGCACTG CGACCTGGAG
GCGCTGGTGC GCGAGGGGCG CTTTCGCGCC GACCTGTATT ACCGCCTGAA CGGCGCGCAC
CTGGTGCTGC CGCCGCTGCG CGAGCGCACC GACCTGGGCT GGCTGATAGC GCGCATGCTG
GCGAACCCGC GCGACGGCAG CGACACGGCA CCGCTGGCGC TTTCCCTTGA TGCGCGCGCC
CGCCTGCTGG CGCACCGCTG GCCAGGCAAC CTGCGCGAGC TGCACAACGT GATCGAGTAC
GCGCGCAGCC TGTGCAGCCA TGGCGTGATC GAGCTGGACG ACCTGCCCGA TCACCTGGCT
GCCGCGCCGC GCCTTCCGGC ATCGGCATCG GCAGAGCCAG CCGCCCCAGC CCCGGCTCTG
GCCAGCGAGG CGGCGCAACT GCTGCAGCAT CTGAGCGCCA CCCACTGGAA CGTGGCCGAG
GCGGCGCGCC GCATGGGCCT GTCGCGCATG ACGCTGTACC GCCGCATGCA GCGCTGGGGC
ATTGCCTCGC CGAACCAGCG CGACGGCGGC GCGGCCGGCT GA
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| Protein sequence | MQTYQREHID RVMQTVAGGS AGTPDAAGDS LIHDSWRRCA RDYRLDPTRM QDAIILPSHR
LREHQDRMDE FLQIARSGMQ ALYQHVAGLG YVVLLTDARG VTVDFLGDLN SDHSLRRAGL
YLGSDWSEPL AGTCGVGTCI STGQALTVHQ GDHFDATHIP LTCTTAPVFD GRGQLNAVLD
ISALRSPQSK ESQHMALQMV QIYAHHIENA SFLRQFRHDW VLRLSPSPQF LEVNPDYLLA
LDAAGRVIGH NRRAQLLLQD CVAGPLIGAA FERLFNARLG DLGRFLHSCP ADRRAITLAG
SSQLLFLLAS PAPAAARPAP SAAVEPVPAP LAALCGGDAA LARQIARAAR FVNSPIGLLL
TGETGSGKEF FAKALHASGE RRGRPFVAVN CAAIPEALAE SELFGYLPGS FSGAGSRAKR
GLVQEADGGT LFLDEIGDMT LALQARLLRV LAEREVLPVG ATRPVPVNIR VMAATHCDLE
ALVREGRFRA DLYYRLNGAH LVLPPLRERT DLGWLIARML ANPRDGSDTA PLALSLDARA
RLLAHRWPGN LRELHNVIEY ARSLCSHGVI ELDDLPDHLA AAPRLPASAS AEPAAPAPAL
ASEAAQLLQH LSATHWNVAE AARRMGLSRM TLYRRMQRWG IASPNQRDGG AAG
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