| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0570 |
|---|
| Symbol | |
|---|
| ID | 4689206 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 605150 |
|---|
| End bp | 606154 |
|---|
| Gene Length | 1005 bp |
|---|
| Protein Length | 334 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639833565 |
|---|
| Product | SMP-30/gluconolaconase/LRE domain-containing protein |
|---|
| Protein accession | YP_980811 |
|---|
| Protein GI | 121603482 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3386] Gluconolactonase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.910733 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAACAA AAAACATCCT TGGCCGCGCC CTGCTGGCCG CCAGTGTGGC CGGAGTTTTT
GCCTCGGCAG CCGCCCAGGC GCAAAGCCCC GCGCCCTCCG GGGCGGTGAC GCCGGCCATT
GCCGGCGTGG TGGCGGCGGG AACGCCGATT GAGCTGATCA AGGAAGGTTT CCATGGCACC
GAGGGGCCGG TGGCCTTGCC AGACGGCAGC CTGATCTTCA CCGAAACCAC GGCCAACCGC
GTGACCCGCA TCGCGCCCGA TGGGGCGACC TCGACCTTCG TCGAGGGCAG CAATGGCGCC
AATGGGCTGG GCTTCACCGC CAACGGCGAC CTGTACGCGG TGCAGGTACT GAAAGCCCGC
GTGGGCATCA TCTTCCCGAC GACCAAGGCC AGGACGCTGG CCGACAACTT TGAGGGGGCG
CCGTTTGGCC GTCCCAATGA CCTGGTGGTG GACAGCCGGG GCAATGTCTA TTTCACCGAT
TCCGGCGCGA ACCCGCCTGT GGCGGGTCAG CCGGCGCCGC CCGTGCAGGC GACCGCGCCA
GCCAAGCCTG CGGTTTACCG CATCTCGGCC AAGGGGGAAC TCAAGCGCCT GGCGGCTGAC
ATCGAGCGCC CCAACGGCAT CCAGCTCAGC CCGGACGAAA AAGTACTGTA TGTGGCCAAC
ACCCTAGGCG AGCACTTGCT GGCCTATGAC ATCGCGCCCG ACGGCGCCCT CGGGCCGCGC
CGCAACTTCG CCAAATTGGA AGGCTGGCAA AAGACCGACA CCGGCAACTC CAGCGGCGCC
GACGGCCTGG CCGTGGACGA GGCGGGCCGC GTCTATGTGG CCAGCAACAA GGGCATCGAG
GTGTTCAGCA GCCAGGGCGA GGCGCTGGGC AGTATCGCCC TGCCGAAAAA GCCGCAGAAC
CTGGCCTTTG CCGGCGAGCG CAAAAAGACC CTGTACGCGG TGGGGCGCGG TGCGGCCTAC
CGCCTGCCGG TGCTGACTGC CGGTTATGCC GGGCGCGCCA AGTAA
|
|---|
| Protein sequence | MTTKNILGRA LLAASVAGVF ASAAAQAQSP APSGAVTPAI AGVVAAGTPI ELIKEGFHGT
EGPVALPDGS LIFTETTANR VTRIAPDGAT STFVEGSNGA NGLGFTANGD LYAVQVLKAR
VGIIFPTTKA RTLADNFEGA PFGRPNDLVV DSRGNVYFTD SGANPPVAGQ PAPPVQATAP
AKPAVYRISA KGELKRLAAD IERPNGIQLS PDEKVLYVAN TLGEHLLAYD IAPDGALGPR
RNFAKLEGWQ KTDTGNSSGA DGLAVDEAGR VYVASNKGIE VFSSQGEALG SIALPKKPQN
LAFAGERKKT LYAVGRGAAY RLPVLTAGYA GRAK
|
|---|
| |