| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0557 |
|---|
| Symbol | |
|---|
| ID | 4686216 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 587932 |
|---|
| End bp | 589119 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639833552 |
|---|
| Product | acyl-CoA dehydrogenase type 2 |
|---|
| Protein accession | YP_980798 |
|---|
| Protein GI | 121603469 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.692519 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCGCCA CTCATCAACT CAAGGCCATT GCGCCTCTCC AGATCGCCCG CCAGCTCGCC
GCCCGGTTTG CCGAAACCGC CGCCGAGCGC GACCTGCGCG GCGGCACGCC CAAGGCCGAG
CGCGACGCCC TGCGCCACAG CGGCCTGCTC GCCCTGAGCA TCCCCCGGCA ATACGGCGGC
CTGGGCGCCA GCTGGAGCGA AACGCTGCAG ATCGTGCGCG AATTTGCCCG CGTGGACAGC
TCGATTGCCC ATGTCTATGG CTTTCAGCAC CTGATGCTGG CCACCGTGCG CCTGTTCGCG
CGGCCCGACC AGTGGGAGCC GTGGTTCGAG CAGACCGCCC GCAACGACTG GTTTTGGGGC
AATGCGCTGA ACCCGCTGGA CACCCGCACG GTGTCGAAAA AGCTCAACGG CTGGCGCGAA
TTTTCCGGGC GCAAGAGCTT TTGCTCCGGC TCGGCCGACT CGGAAATGCT GATCGCCTCG
GCGCTCGACG AGTCCAGCAG CGGCAAGCTG CTGATCGCGG CCATTCCCAG CGGCCGCAGC
GGCATCACCC TGCATGGCGA CTGGGACAAC ATGGGCCAGC GACAGACCGA CAGCGGCAGC
GCCACCTTCG AGCGCGTGCG GGTCGAAGAA AACGAGTTGC TGCTGGACCC GGGGCCGCTG
AGCACACCCT TTGCCTGTCT GCGCCCCTTG ATTGCCCAGC TGACCTTTGC CAACCTGTTC
CTCGGCATTG CCGAAGGCGC TTTTGACGAA GCACGGCATT ACACGCTCAA GGAGTCGCGC
GTCTGGTTCA AGTCCAAGGC CACCCACGTC AGCGAAGACC CGTACACGCT GCGCCACTAC
GGCGAGTTCT GGGTCGGTCT GGAGGGCGTG CGACTGCTTA CCGAACGGGC CAACAACCTG
CTCGACGAGG CCTGGCGCAA GGAAAACCGG CTGGGCGCAG AGGAACGCGG CCACCTGGCC
GTGGCCATCG CCACCGCCAA GGTCGCCGCC ACCCGCTGCG GGCTCGATGT GACCAGCCGG
CTGTTCGAAG TGACCGGCGC GCGCGCCACC CATGCTGCCT TGCGGCTGGA CCGCCACTGG
CGCAACCTGC GCACCCAGAC CCTGCACGAT CCGGTGGACT ACAAGCTGCA GGAACTGGGC
GACTGGGCGC TCAATGCATC ACTGCCGGCG CCCTCTTTCT ACTCCTAG
|
|---|
| Protein sequence | MTATHQLKAI APLQIARQLA ARFAETAAER DLRGGTPKAE RDALRHSGLL ALSIPRQYGG
LGASWSETLQ IVREFARVDS SIAHVYGFQH LMLATVRLFA RPDQWEPWFE QTARNDWFWG
NALNPLDTRT VSKKLNGWRE FSGRKSFCSG SADSEMLIAS ALDESSSGKL LIAAIPSGRS
GITLHGDWDN MGQRQTDSGS ATFERVRVEE NELLLDPGPL STPFACLRPL IAQLTFANLF
LGIAEGAFDE ARHYTLKESR VWFKSKATHV SEDPYTLRHY GEFWVGLEGV RLLTERANNL
LDEAWRKENR LGAEERGHLA VAIATAKVAA TRCGLDVTSR LFEVTGARAT HAALRLDRHW
RNLRTQTLHD PVDYKLQELG DWALNASLPA PSFYS
|
|---|
| |