| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0518 |
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| Symbol | |
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| ID | 4689484 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 545995 |
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| End bp | 546762 |
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| Gene Length | 768 bp |
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| Protein Length | 255 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 639833514 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_980760 |
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| Protein GI | 121603431 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.41021 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACCAG CTTCGTCCCG ACCCGTGGTT CTCGTGACCG GCGCCGCCCT GCGGCTGGGC
CGCGAAATCG CGCTGGCGCT GGCCGCCGGC GGCTGGCAGG TGGCGGTGCA TTACCGCAGT
TCCGAGGCTG ACGCTATTAA AACCGTAGCT GACTGCGCAC GGCTGACGTG CGCATCGGCT
GCTTTTGATG CCGACTTATC AGATGAAGCG GCCGTGCGCG GCCTCGTGCC GCGCGTCATC
GCCCACTTTG GCCGCGTCGA TGCGGTGGTC AACAGCGCCT CGACCTTCGA GCACGACACG
GCCGCCAGCT TTGGCTTTGC CGCGCTGGAC AAGCACCTGC GCAGCAACAC CGGCGCCGCC
ATCCTGCTGG CCCAGGCGCT GCATGCGCAT GTGGCCGCGC GCAATGCCAC GGGCGCGGTC
GTCAACCTGC TCGACCAGAA GCTCTGGAAC CAGAACCCCG ATTTTTTCAG CTACACGCTG
TCCAAGGCCG CGCTGGAAGC GGCCGGCACC ATGCTGGCCA TGGCGCTGGC GCCCGAGGTG
CGCGTGGTCG GCGTCGCGCC CGGGCTGACG CTGACCAGCC ACCTGCTGAC GGGCGAGGCC
TTCGAGGCGC GCCACAAGCT CTCGCCGCTG GGCCGCTCGT CCACGCCGGC CGATGTGGCT
GCGACGGTGA AGTTCGCGCT GGAAAACTCG TCCATCACCG GCACCACGCT GCTGGTCGAT
GGCGGCCAGC ACCTGATGCG CTTCGAGCGG GATTTCTCGC TGATGTGA
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| Protein sequence | MTPASSRPVV LVTGAALRLG REIALALAAG GWQVAVHYRS SEADAIKTVA DCARLTCASA
AFDADLSDEA AVRGLVPRVI AHFGRVDAVV NSASTFEHDT AASFGFAALD KHLRSNTGAA
ILLAQALHAH VAARNATGAV VNLLDQKLWN QNPDFFSYTL SKAALEAAGT MLAMALAPEV
RVVGVAPGLT LTSHLLTGEA FEARHKLSPL GRSSTPADVA ATVKFALENS SITGTTLLVD
GGQHLMRFER DFSLM
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