Gene Pnap_0488 details

Gene Information

• Locus tag: Pnap_0488
• ID: 4687721
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Polaromonas naphthalenivorans CJ2
• Kingdom: Bacteria
• Replicon accession: NC_008781
• Strand: +
• Start bp: 510042
• End bp: 515939
• Gene Length: 5898 bp
• Protein Length: 1965 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 639833484
• Product: excinuclease ABC, A subunit
• Protein accession: YP_980730
• Protein GI: 121603401
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0178] Excinuclease ATPase subunit
• TIGRFAM ID: [TIGR00630] excinuclease ABC, A subunit

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 29
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTCCCAGG GAACCATCCG CATTCGCGGC GCGTGCCAGC ACAACCTCAA AAATATCGAC 
CTGGACATCC GCACCGGCGA GCTGACGGTG GTTACCGGTC CCAGCGGCTC GGGCAAGTCC 
AGCCTGGTGT TCGACACGCT GTTTGCCGAA GGCCAGCGCC GCTATGTCGA AACCTTCTCG 
GCCTATGCGC GGCAGTTCCT GGACCGCATG GACAAGCCGG CGGTGGACAA GGTCGAGGGC 
GTGCCGCCGG CGATTGCCAT CGACCAGACC AATCCGGTGC GCTCCTCGCG CTCGACCGTC 
GGCACCATGA CCGAACTCAA CGACCACCTG AAGCTGCTTT ACGCCCGGGC CGCGCAGCTG 
TTCGACCGGC AGACGGCACT GGCCGTTCGG CACGACTCTC CGGAATCCAT CTACGCCGAG 
CTGATGGCGC GCACCGCAGG CGCTGACCCG CGCGTCGTCA TGACCTTCCC GGTCGAGCTG 
CCGGGCAACA CCAGCGCCGC AGAGGTCGAG CAGTGGCTGT CGGCCAGCGG CTTCACGCGC 
GTCCATGCGC AGCGCGACGT GGCAACGCCC GCCGGGCCGC ACAAGCTGCT CGACGTGGTG 
GCCGACCGCT TTCGCCTGCA CCTGACTGAA AAAATCCGCG TCATCGAGGC GATTGAAACC 
GCCCTGAAGC GCGGCGGCCG CCTGAATGTG TATGTGCAGC CGGGCCAGCC TGGCGAGGCC 
GAAGAAATGT GGCGCTTTTC CACCGGCCTG CATTGCCCTG AAAGCGACCT GCGCTACACC 
GATCCCACGC CGTCGCTGTT TTCCTTCAAT TCGGCCATGG GCGCCTGCGA GACCTGCAAG 
GGCTTTGGCC GCGTGATCGG TGTCGATTAC GGGCTGGTGA TTCCGAACGA CAGGCTCACG 
CTGCGCGCCG GCGCCATCAA GGTGATGCAG ACGCCGGCCT GGAAGGAAGC GCAGGACGAT 
TTGATGCGCC ACGCCGAAGC CGAGGGCATT CCGCGCGACA CGCCCTGGTA CAAGCTCACA 
CCCGAGCAGC AGGCCTGGGT GATCAACGGC TCGCCTGACT GGAAGGGGAA ATGGGAGAAG 
CACTGGTTCG GCATCAAGCG CTTCTTTGCT TACCTGGAGA GCAAGGCCTA CAAGATGCAC 
ATCCGGGTGC TGCTGTCCAA GTACCGCAGC TACACCACCT GCGAGGCCTG CGGCGGCGCG 
CGGCTCAAGC TCGAATCGCT GCAGTGGCGG CTGGGCAGCA AGGAGGCCGC CGATGCGGTC 
TTGCCGCCGG CCGAGCGCTT CATGCCGGTC GGCGTTCAAT GGACGCGCGC ACAGCTCGAA 
GCGATGCCGG GGCTGTGCCT GCATGACCTG ATGCGCTTGC CAATTGACCG GTTGCAGAAG 
TTCTCCGGCA GCCTTTCATT TGCCGCTGCT GGCGATGATG CCGAGCAAAA GGCCCTGAAA 
TCGCTGTTCG AGGAAATCCG CACGCGCGTC AAATACCTCT GCGATGTCGG CATCGGCTAC 
CTGACGCTGG ACCGCCAGAG CCGCACGCTG TCGGGCGGCG AGGTGCAGCG CATCAACCTG 
ACGACCGCGC TGGGCACGTC GCTGGTCAAC ACCCTGTTCG TGCTCGACGA GCCGTCCATC 
GGCCTGCATC CGCGCGACAT GCACCGCATC ACGCAGGCGA TGCGCCGGCT GGTCGATGCC 
GGCAACACGC TGGTTGTCGT CGAGCACGAC CCGGCCGTCA TGCTGGCCGC CGACCGCATG 
ATCGACATGG GGCCGGGGCC GGGCGAGAAG GGCGGGCAGA TCGTCTTCGA CGGCACGCCC 
GAGGAAGTGC GGCATGCCGA CACGCTGACC GGCGCCTACC TGGGCGGGCG CAAGCTGGTC 
GGCATGGGCT TGAAGCGCGC CGTGACCGAC AACACGCCGC GCCTGGTTTT AGAGGGCGCG 
CGCGACCACA ACCTGAAAAA CCTCACGGTC GAGTTCCCGC TGCAGCGCCT GGTCTGCGTG 
ACCGGCGTCA GCGGCTCGGG CAAATCGACG CTGATGCAGG ACATCCTGGC GCCCGCGCTG 
CTGCGCCAGT TCGGCAAGGC GACCGAAACG CCGGGCCTGC ATGACCGGCT GCTGGGCGCC 
GAGCGCCTGA CGGACGTGGT GTTTGTCGAT CAGTCGCCGA TTGGCAAGAC CGCGCGCTCG 
AACCCGGCCA GCTATGTCGG CGCCTGGGAC GCCGTGCGCG AGCTGTTCGC CCTGTCGCCG 
CTGGCCCGGC AGCGCAGCTA CACGGCGAGC AAATTCAGCT TCAACAATGG CGATGGCCGC 
TGCCCGACCT GCGGCGGCTC GGGCTTCGAG CATGTCGAGA TGCAGTTCCT GAGCGACGTG 
TACCTGCGCT GCCCCGACTG CGACGGCAAG CGCTACCGGC CTGAAATCCT CGAAGTCACG 
ATTGAGCGCC AGGCCATCGG CCAGCTCAAA TCCCGGCTGC TCAATGTGGC CGATGTGCTG 
GATTTGACCG TCAGCGAAGC CGTGCAGCTG TTCGCGCAGG ACCGCGAAGT CATGCGCGCC 
CTGCAGCCCA TCCTTGATGT CGGGCTGGAA TACGTCAAGC TCGGCCAGCC CGTGCCCACG 
CTCTCGGGCG GCGAGGCGCA GCGGCTCAAG CTCGCGGGCT TCCTGGCCGG CGCCAGCAAG 
GCGGCGGGCC AGCGCCAGAG CGCCAGCGGG CAGGCGCTGG CGCTCAAGCA CCCGAACCGG 
GGCACGCTGT TTCTGTTCGA CGAGCCGACC ACCGGCCTGC ATTTCGACGA CATCGCCAAG 
CTCATGCGCG CGCTACGCCG GCTGCTGGAG GCCGGCCATT CGCTGATCAT CATCGAGCAC 
AACCTGGACG TGATCCGCTC GGCCGACTGG CTGATCGACC TCGGCCCTGA AGGCGGCGAG 
AACGGCGGCC TGCTGGTGGC TGAAGGGCCG CCGGAAATCG TTCGCCATCA TCCCACGTCG 
CACACGGCGC TGGCCTTGCG CGACTACGAG CAAGCCATGA GCAAGTCGTA CAAAGTTGAA 
GAGCCAAGGC CCAAGGCCTG GAAGACGCGG CCGGCTTTTT CCAACCTGAT TCAGATCGTC 
AACGCCAGGG AAAACAACCT CAAAAGCCTG TCGGTCGATA TTCCGCGCGG CAAGTTCAAT 
GTGGTCACGG GTGTCAGCGG CTCGGGCAAA TCGACGCTGG CCTTTGACAT TTTGTTCAAC 
GAGGGCCAGC GCCGCTACCT GGAGTCGCTC AACGCCTACG CCCGCAGCAT CGTGCAGCCG 
GCGGGCCGGC CCGAGGTCGA TGCGGTTTAC GGCATTCCGC CCACGGTGGC CATCGAGCAG 
CGGCTGTCGC GCGGCGGGCG CAAATCGACC GTCGGCACGA CCACCGAGGT CTGGCACTTT 
TTGCGCCTGC TCTACGTCAA GCTGGGCATC CAGCACTGCA CCAAGGATGG CGCGGCGGTC 
ATGCCGCAAA GCCCCGAGAG CATCGCCGCC CAATTGCTGA AGACCTACCG GGGCCAGCAC 
ATCGGCCTGC TCGCGCCGCT GGTGATGAAC CGCAAGGGCG TCTATACGGA ACTCGCCGAC 
TGGGCGCGGC CGCGCGGCTA CACGCATCTG CGCGTCGATG GCGAGTTTTT GCCGACCACC 
GGCTTTCCGC GCATCGACCG CTTCAAGGAA CACACGGTCG AGTTGCCGAT TGCCGACATC 
CACGTCACGC CCGACAACGA AGCCGCGCTG CGGCAGGCCC TGGCCACCGC GCTGGAGCAT 
GGCAAGGGCG TGGTGCATGT GCTGGCAACG CTTGATGGCC TGTGGGAGGC GATGCTGGCC 
GGCGCCAGCA CCCAGGCGAT TGGCCGGATC GAGGCCTTCT CGACGCGCCG CGCCTGCCCG 
GTCTGCTCCA CGTCTTATCC CGAACTCGAC CCGCGCCTGT TCAGCTACAA CAGCAAGCAC 
GGCTGGTGCC CGGACTGCGT CGGAACCGGC GTCAAGCTGA CCAGGGACCA GCGCAAGGTG 
TTCGACGATT CGGTGCTGGG CAGCGACGAC AACAAGGGCC GCGAGCAGAC CTTTGGCGAG 
CCCGAGACCG ACGACGTGCT CGATGCGGTT TGCCCGGCCT GCGCAGGCAC GCGCCTGAAC 
CCGCAGGCGC GTGCCGTGCT GTTTGCCGAT GCCGGGATTG CCGACATTGC CGCGCTGTCG 
GTGACCGATG TGCGCGGCTG GGTCGATCAA CTGGCGCTCA GCGGACGCGA AGCCGGCATC 
GCCCGCGACC TGGTTCCTGA GATCAGGAGC CGTCTTGAAT TCCTCGAAGA CGTGGGCCTG 
GGCTACCTCA CGCTGGACCG GGGCGCGCCG ACGCTGTCGG GCGGCGAGGC GCAGCGCATC 
CGGCTGGCCG CGCAGCTGGG CTCGAACCTG CAGGGCGTCT GCTATGTGCT TGACGAGCCG 
ACGATTGGCC TGCATCCGCG CGACAACCAG ATTCTGCTCG GCGCCCTGGG CAAGCTCAGC 
GAGCGTGGCA ACACGCTGGT GGTGGTCGAG CATGATGAAG ACACGATTCG CCGCGCCGAC 
AACATCATCG ACATCGGCCC CGGCGCCGGC AAGCGCGGCG GGACGCTGGT GGCGCAGGGC 
ACGGCGGCGC AGCTGTCAGC CGTGCCGGAA TCGCTCACGG GACGCTATCT GGCGAACCCG 
CTGATTCATC CCTTGCATGC GCGCCGCCAA ACGCTTGCTG GAAGCGCTGT CGCTGAATTG 
GACTCTGACC CCGGTGCAGC GGCCTCACCG GGCGCAGTTC CCGCCAAACC CCTGAGCAAG 
GCCAGGCAGG CCGCCCTGAA AGCCCAGGCC CTCAAAGCCG CAGCCGCCCA AGCCAGCGCC 
CAGCACAACG CAGCGCCCGC CGCCGCCAGC CCGTTCACCT CGTGGCTGAC AGTCGTCAAC 
GCCAGCCTGC ACAACCTCAA AAACGTCACC GTCGAAGTGC CGCTCTACCG GCTGGTCGCC 
GTCACCGGTG TTTCGGGCTC CGGCAAATCC ACGCTGGCGC GCGACGTGCT GCTGACCAGC 
GTCCACGCCG GCGTCACGCA GCGCTCGACC AAGGCCGGGC GCGAGGCCGA CGACGCCGGC 
AAGCACCCGG CCTGGACCGG TTGCGAGCGC ATCGAAGGCT ATCGCGTCGT GGACCGCGTG 
CTCGAAGTGG ACCAGACGCC CATCGGCAAG ACCCCGCGCT CCTGTCCGGC GACCTACATC 
GGCTTCTGGG ACACGGTGCG CAAGCTGTTC GCCGACACGC TCGAAGCGCG CGCGCGCGGC 
TACGCGGCAG GGCGCTTTTC CTTCAACACC GGCGAAGGCC GCTGCCCGAC CTGCGAAGGC 
GCGGGCGTGC GCACCATCGG CATGAGCTTT CTGCCCGATG TGAAGGTGCT GTGCGAAACC 
TGCCACGGCG CGCGCTTCAA CCCCGAAACG CTGGCTGTCA CCTGGCGCGG CAAAAGCATC 
GGCGACGTGC TGAAGATGGA AGTCGATGAG GCGGTGGATT TCTTCGCCGC CATGCCCGCC 
ATCGGCCACC CGCTGCAACT GCTCAAGGAT GTGGGCCTGG GCTACCTCAC GCTGGGCCAG 
CCGTCGCCCA CGCTGTCGGG CGGCGAGGCG CAGCGCATCA AGCTGGTGAC CGAACTCAGC 
AAGGTGCGCG ACGACATCAC CCGGCGCGGC CAGAAGGCGC CGCACACGCT GTATGTGCTC 
GACGAGCCGA CCGTCGGCCT GCACATGGCT GATGTCGAAA AGCTGATCCA TGTGCTGCAC 
CGCCTGGTCA ACGGCGGCCA TAGCGTGATC GTCATCGAGC ACGACCTCGA CGTGATTGCC 
GAAGCCGACT GGGTGATCGA CCTGGGGCCG GACGGCGGCA ACGCGGGCGG GCTGGTGGTG 
GCCTCCGCGC CGCCCGAAGC CGTGGTGGCG CTGGGCACAG CGACCGGCAA GGCGCTGGCG 
GCGGTGCTGG CGCGCTAG 

 

Protein sequence

MSQGTIRIRG ACQHNLKNID LDIRTGELTV VTGPSGSGKS SLVFDTLFAE GQRRYVETFS 
AYARQFLDRM DKPAVDKVEG VPPAIAIDQT NPVRSSRSTV GTMTELNDHL KLLYARAAQL 
FDRQTALAVR HDSPESIYAE LMARTAGADP RVVMTFPVEL PGNTSAAEVE QWLSASGFTR 
VHAQRDVATP AGPHKLLDVV ADRFRLHLTE KIRVIEAIET ALKRGGRLNV YVQPGQPGEA 
EEMWRFSTGL HCPESDLRYT DPTPSLFSFN SAMGACETCK GFGRVIGVDY GLVIPNDRLT 
LRAGAIKVMQ TPAWKEAQDD LMRHAEAEGI PRDTPWYKLT PEQQAWVING SPDWKGKWEK 
HWFGIKRFFA YLESKAYKMH IRVLLSKYRS YTTCEACGGA RLKLESLQWR LGSKEAADAV 
LPPAERFMPV GVQWTRAQLE AMPGLCLHDL MRLPIDRLQK FSGSLSFAAA GDDAEQKALK 
SLFEEIRTRV KYLCDVGIGY LTLDRQSRTL SGGEVQRINL TTALGTSLVN TLFVLDEPSI 
GLHPRDMHRI TQAMRRLVDA GNTLVVVEHD PAVMLAADRM IDMGPGPGEK GGQIVFDGTP 
EEVRHADTLT GAYLGGRKLV GMGLKRAVTD NTPRLVLEGA RDHNLKNLTV EFPLQRLVCV 
TGVSGSGKST LMQDILAPAL LRQFGKATET PGLHDRLLGA ERLTDVVFVD QSPIGKTARS 
NPASYVGAWD AVRELFALSP LARQRSYTAS KFSFNNGDGR CPTCGGSGFE HVEMQFLSDV 
YLRCPDCDGK RYRPEILEVT IERQAIGQLK SRLLNVADVL DLTVSEAVQL FAQDREVMRA 
LQPILDVGLE YVKLGQPVPT LSGGEAQRLK LAGFLAGASK AAGQRQSASG QALALKHPNR 
GTLFLFDEPT TGLHFDDIAK LMRALRRLLE AGHSLIIIEH NLDVIRSADW LIDLGPEGGE 
NGGLLVAEGP PEIVRHHPTS HTALALRDYE QAMSKSYKVE EPRPKAWKTR PAFSNLIQIV 
NARENNLKSL SVDIPRGKFN VVTGVSGSGK STLAFDILFN EGQRRYLESL NAYARSIVQP 
AGRPEVDAVY GIPPTVAIEQ RLSRGGRKST VGTTTEVWHF LRLLYVKLGI QHCTKDGAAV 
MPQSPESIAA QLLKTYRGQH IGLLAPLVMN RKGVYTELAD WARPRGYTHL RVDGEFLPTT 
GFPRIDRFKE HTVELPIADI HVTPDNEAAL RQALATALEH GKGVVHVLAT LDGLWEAMLA 
GASTQAIGRI EAFSTRRACP VCSTSYPELD PRLFSYNSKH GWCPDCVGTG VKLTRDQRKV 
FDDSVLGSDD NKGREQTFGE PETDDVLDAV CPACAGTRLN PQARAVLFAD AGIADIAALS 
VTDVRGWVDQ LALSGREAGI ARDLVPEIRS RLEFLEDVGL GYLTLDRGAP TLSGGEAQRI 
RLAAQLGSNL QGVCYVLDEP TIGLHPRDNQ ILLGALGKLS ERGNTLVVVE HDEDTIRRAD 
NIIDIGPGAG KRGGTLVAQG TAAQLSAVPE SLTGRYLANP LIHPLHARRQ TLAGSAVAEL 
DSDPGAAASP GAVPAKPLSK ARQAALKAQA LKAAAAQASA QHNAAPAAAS PFTSWLTVVN 
ASLHNLKNVT VEVPLYRLVA VTGVSGSGKS TLARDVLLTS VHAGVTQRST KAGREADDAG 
KHPAWTGCER IEGYRVVDRV LEVDQTPIGK TPRSCPATYI GFWDTVRKLF ADTLEARARG 
YAAGRFSFNT GEGRCPTCEG AGVRTIGMSF LPDVKVLCET CHGARFNPET LAVTWRGKSI 
GDVLKMEVDE AVDFFAAMPA IGHPLQLLKD VGLGYLTLGQ PSPTLSGGEA QRIKLVTELS 
KVRDDITRRG QKAPHTLYVL DEPTVGLHMA DVEKLIHVLH RLVNGGHSVI VIEHDLDVIA 
EADWVIDLGP DGGNAGGLVV ASAPPEAVVA LGTATGKALA AVLAR