Gene Pnap_0479 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_0479 
Symbol 
ID4688115 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp500050 
End bp500739 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content64% 
IMG OID639833476 
ProductDSBA oxidoreductase 
Protein accessionYP_980722 
Protein GI121603393 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG3917] 2-hydroxychromene-2-carboxylate isomerase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTTCCA TGAACCCAAA TCTTCAAGCC CCGGCCGCTG AACTCAAGGA CATCAGCTGC 
TATCTCGACT TCATCTCGCC CTACGCCTAC CTGGCGTTTG AGCTGCTGCC CGAAGCCTTG
CAAGGCATCA GCTACAGCCT GAGCTACAAG CCGGTGCTGT TCGGCGCCAT GCTCAAGCAC
CATGGCCAGC TGGGACCGGC CGAAATCGCC CCCAAGCGCG ACTGGACTTA CCGGCAGGTA
GCGTGGCTGG CGCACCGCCA CGGCATTCCC CTGCAGATGC CGGCCAGCCA TCCGTTCAAC
CCCTTGCCGC TGCTGCGGCT GGCGCTGGCC TGCAGTCCCG CAGCCGAGCC CACTGCGCCC
AACCGCTATG TCTGCGAAAC CATTTTTCGC CATGTCTGGC GTGGCGGCAA CGAGGTGACC
GACCCGGCCC GCCTGCAGGC GTTAACCAGC GCGCTGGCGC CGCCGCGTGA AGTTAATGGC
GACGAGGTCA AGATGCAGCT CAAGCGCAAT ACCGACGAGG CCATCGCGCT CGGCGTGTTT
GGCGTGCCGG CTTTTGTCGT GGACGGCAAG CTGTTCTGGG GGCTGGATTC GTTGCCGATG
CTGCGTGCGT ACTTGCAGGG CGATGCCTGG TTTGACGGTC CGGCCTGGGA TGCTGGCGCC
AGCGTCCGGG AAGGCCTGCG GCGTCAGTAA
 
Protein sequence
MTSMNPNLQA PAAELKDISC YLDFISPYAY LAFELLPEAL QGISYSLSYK PVLFGAMLKH 
HGQLGPAEIA PKRDWTYRQV AWLAHRHGIP LQMPASHPFN PLPLLRLALA CSPAAEPTAP
NRYVCETIFR HVWRGGNEVT DPARLQALTS ALAPPREVNG DEVKMQLKRN TDEAIALGVF
GVPAFVVDGK LFWGLDSLPM LRAYLQGDAW FDGPAWDAGA SVREGLRRQ