| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0467 |
|---|
| Symbol | |
|---|
| ID | 4686109 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 487567 |
|---|
| End bp | 488226 |
|---|
| Gene Length | 660 bp |
|---|
| Protein Length | 219 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639833464 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_980710 |
|---|
| Protein GI | 121603381 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0637] Predicted phosphatase/phosphohexomutase |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.530029 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTCG AAGCAATCCT GTTTGACTGC GACGGCGTGC TGGTGGACAG CGAACCGATC
ACCAACGGCG TGCTGCGCGA CATGCTCGAA GAAGGCGGCT GGTCGCTCAC GCCTGCCGAG
TGCATGCGGG TGTTCGTCGG CAAGGCGGTG CGCGACGAGC GCCTGCTGAT CGAAGCCAAA
ACCGGCCAGC CACTGACCGA GGACTGGATG GCCGAGTTCT ACGCGCGGCG CAACCGCGAG
CTGCAGGCGC GTCTGACGGC CATCGCGGGC GCGCACGAGG CCGTGGCGGC GGCGCACGCC
CATGTGGCCG AGCGCATCGC CTGCGCGTCG GGCGCTGACC GCTTCAAGGT CGAAATGCAG
CTGGCGCAGG TCGGGCTGAT GGATTATTTT GCGGGCCGCA TCTTCAGCGG CCACGAGATG
CCGCGCTCCA AGCCCGCGCC CGATGTGTAC CTGGCCGCTG CCGCGCACCT GGGCGCGGCG
GGTGCGCGCT GCCTGGTGAT CGAGGACACG ACGACCGGCG TGACGGCTGG CATCGCCGCC
GGGGCCACGG TCTGGGCGTA TTGCCCGCAG CCTGAACAGG GCGCGGTCTT GAGGCAGGCC
GGCGCGAGCC AGCTGTTTGC GCATATGGCC GAGTTGCCGG GGCTTTTGGC CGCCGTTTGA
|
|---|
| Protein sequence | MKFEAILFDC DGVLVDSEPI TNGVLRDMLE EGGWSLTPAE CMRVFVGKAV RDERLLIEAK
TGQPLTEDWM AEFYARRNRE LQARLTAIAG AHEAVAAAHA HVAERIACAS GADRFKVEMQ
LAQVGLMDYF AGRIFSGHEM PRSKPAPDVY LAAAAHLGAA GARCLVIEDT TTGVTAGIAA
GATVWAYCPQ PEQGAVLRQA GASQLFAHMA ELPGLLAAV
|
|---|
| |