| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0450 |
|---|
| Symbol | |
|---|
| ID | 4688407 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 468674 |
|---|
| End bp | 472207 |
|---|
| Gene Length | 3534 bp |
|---|
| Protein Length | 1177 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 639833447 |
|---|
| Product | multi-sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_980693 |
|---|
| Protein GI | 121603364 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTGC AGACCCTGCG CAAGCGCCTT GTCTGGCTGT TGATGGCCGC CATGACACCG
TTGTTTGGCC TGGCCATTCT CAACGCCCAG TTGAACGCAG ATGCGGCCGT CAGCCGGGCC
ACTGACAACC TGAAGTTCGC GGTCTCGCTG GCCGCCTCGA ACCAGCAGCG GATGACCGAG
ACGGTGCATC AGCTGTTGAC CGCCATCAGC CAGGTTCCCG AGATCCAGCA GGGCCAGCCG
GCGTCCTGCA ACCGTTACCT TGGTGAGATC AAGCGGCGCT TGCCCGACTA CATGAACCTC
GGTGTTGTCG GCATGGATGG CTATGCGCGC TGCCACGCAC TCGCGGAAGG TTCCCAGGGC
GCTGCGCGGG CGTTTTTTGG TGATCGCCTG TATTTTCGTG AAGCCGTCGC CCGGCGCAAT
TTTTTTGCCG GCGAGTACAT CGTGGGACGC ATTACGGGAA AACCTTCCGT GACGTTTGCC
TTGCCGGTGC TCGACGTGCA AGGCCGTGTT TCCTTCGTGG CCTATGCCGC GCTCGACCTG
TCCAGCATGG CCAGGTCAAT CGCCGCCATC GAGTTGCCAG CCGGGGCCAA GCTGGGAATC
CATGACCGAT ATGGCACCTT GCTGGCCGGG ACCGGCGGCA TTCCCATCGC CATTGGACAA
AAGGCCGCCA GCCCGGTTCT GCAGGAAGCG GTCAGAACGC TGGAAACCGG GGTGCGCGAG
GGCCTGGATG CTCGGGGCCA GCATCAGCTC TGGGCCTTCA TGCCCAGCAG TTCCCAAGCC
GACACCGCCT TTTTCGTGGC GGTCGGCATG GACCGCAGCA CGATTCTGGA GCCCAGCCGG
CGCCAGATGT GGCTGGAACT GGCTGCGCTG GCGCTGGTGG CTTTCTTGGG CGGATGGATG
GCCTGGGTAC TGGGCAGCCG TGCCATTGTG AAGCCCTCCG CTGACATTCT TGAGGCCACC
CGGCAACTCC AGCAGGGCCG GCTTGATGTA CGCATCCCGA CTCAATCGGT GCATGCCAGC
CAGGAGCTGA TGCAGATCGC CGTCGGCTTC AACCGCATGG CCGAGTCCGT GCAGGCGCAT
CAGGCGGCAC TTGAGTCTGA ACTGGCCAGC AGCCAGGCTG CCCGGGAGAG GCTGAAGGAC
GCGCAAAGCC TTGCGCGCAT CGGCTACTGG CAGATTGATC TTGCAACCCA GCAGATTTCC
TGGTCTGACG AGGTTTACGA GTTGTTCGAC ATCGACCGTA CCCAGCTTGA CGGCACTTAC
CAGAGCTTTC TCAACTGGAT TCATCCGTCT GACCGTGAGG CTTTCACGGT GGTCCGCGAT
GCTGCGGTTC GGGCCGGAAC CGCGCTGGAT TGCGAGTTCC GCGTCATCGC GCCAGGGGGG
CGGATTTGCT GGATTCATCA GTTTGGCCGG GTTCATTTCA ACCCCGATGG GCGTGCATCA
ACGCAGCGCA CCGGGGTGAT TCAGGACATC ACGCAGCGCA AGCTTGCCGA ACAGGCGCTC
ATCGACAGTG AGCAGCGCTA TGCGGAACTG CTGGAAATGG TGCCCCTTCC GATGTGGGTG
TACGACAGCG CCACGACACG CTTCCTGGCG GTGAACCAGG CGGCGGTCCA GGCCTATGGC
TATTCGGCTG CGGAATTCCT GTCGATGACG ATTTTTGACA TTCGGCCCGA GGCTGAACAT
GCGTACCTGC GCCAGTGGCT GGACAATCCG TTACGAAAAA AGGCCTTGTG GCACGATCTG
CGCAAGGATG CCTCCCTGTT TTCGGTCGAG ACCGTGTCGC AGCCGATTCA GTATGTCGGC
CGGGCGGCGC GCCTTGTCAT CGCCATGGAC AAAACGGCCC AGGACAAGGC CGAAAAGGAA
ACCCAGGACT ACCTGTTCAC ATTGCAGCGC GCGGCAGACG CAGCCCAGGC CATCACCTGG
CACCAGACGC TGGAAGGCAC GATGCAGGAG ATTGCCGACC AGGCGCGCGG CGTGATTGGC
ACGCACCAGG CGGTGGTGAG CCTGAGCGTG GACGGCAATC CCTTGCAAAT GACGCATGCG
CTGTCACTGT CTGAAAAATA TGAACCCTAC CGCAGCCTGA TAAAACCGGC TGACGGCAGC
GACATCCAGG CCGTGGTGAG CGAGAGCAAC CGTTTGATGC GCATGACCCA GGCCGAGCTT
GAGGCACATC CTCGCTGGCC TGGCTTTGGC GGCCATGGGG GCAAACATCC GCCTATGCGT
GGCTGGCTGG CGGTGCCCCT GATTGGAAAA AATGGAAAAA ACATCGGCCT GCTCCAGCTG
TCCGACAAGT ACGAGGGCGA GTTCACCAAG CAGGATGAAT ATGTGGCGCT GGAACTGAGC
CACCTGGCCT CCGCCGGCCT GGAAAACTCA AGACTCCTGG AAGAAATCAG CCAGCTGAAT
GCCGGCCTGG AGCAAAAAGT GGCCGAGCGT ACCGTTGCGC TGGCGCGTCA GGAAGCCCTG
TTCCGGGCAT TGGCCGAGCA GGCGCCGCAG CTGGTGTGGA CCGCCAGCCC CGACGGGGAG
GCCACCTATT TCAACCGCGC ATGGTTCGAC CTCATGGGCG GAAAACTTGA GGACTGGACC
GGCTTGCAGT GGCTTGCGGT CATTCATCCT GACGATGTGT CCGACATCCA GGCCAGCTGG
AAAATCGCCA GGGCCAGCCA GTCCTCTTAC GCAGGCGTGC GGCGCCTGCT GGCCGAAGAT
GGCAGTTGCC ACACCATGGC CTACCGAGGC TCGCCGGTGC TTGACGAGCA GGGCAAGGTC
GCCTTCTGGG TAGGCATTGA TGCCGACATC ACGGAGATCA AGGCCATCGA GGCGGCCTTG
CGCCTGTCCA ACCAGGAACT CGAAGCTTTT TCTTATTCCG TCTCGCATGA CCTTCGCTCG
CCGCTCAACA CCATTGACGG CTTCAGCCGC TTGCTGGCCA AGCAACTGGC GCAGCAACTG
GAGGGGGAGG CGGACGCGAA GGTCACGCAC TACCTGGCGC GCATCCAGGC GGGCGTGGCC
CAGATGGGGC AATTGATCGA GGATTTGCTG TCCCTGTCGC AGGTCACGCG CGCCAGCTTG
CATACCGAAC GGGTCGATCT GTCGTTCATG GCCCGCAGCC TTCTGGATGA ATGGCAAACC
CGCCAGCCCG AGCGCCAGGT CACGGTGACC GTGGAAAGCG GCTTGCAGGC GCAGGGTGAC
AGGCCGCTTG TCAGGATAGT GATGGAAAAC CTGCTGGCCA ACGCCTGGAA ATTCACCTCG
CAAACAGCAC AGGCCAACAT CAGCGTGGGT CAAACATTCG ATGCGGCCGG GTTGCCGGTA
TTTTTTGTCA GGGATAACGG CGCGGGCTTT GACATGGCTT ATTCAGACAA GCTGTTTGAC
CCTTTCCAGC GCTTGCATGC GGCTTCCGAG TTTTCAGGAA CCGGCATCGG GCTGGCAACC
GTCAGCCGCG TCATCAAGCG GCATGGCGGG CGCATATGGG CTGAGTCAGC GCCTGCCTGT
GGCGCCACTT TCTTTTTTAC GCTGCCCCAG GGGGAGGCAT ATGACGCAAG TTGA
|
|---|
| Protein sequence | MKLQTLRKRL VWLLMAAMTP LFGLAILNAQ LNADAAVSRA TDNLKFAVSL AASNQQRMTE
TVHQLLTAIS QVPEIQQGQP ASCNRYLGEI KRRLPDYMNL GVVGMDGYAR CHALAEGSQG
AARAFFGDRL YFREAVARRN FFAGEYIVGR ITGKPSVTFA LPVLDVQGRV SFVAYAALDL
SSMARSIAAI ELPAGAKLGI HDRYGTLLAG TGGIPIAIGQ KAASPVLQEA VRTLETGVRE
GLDARGQHQL WAFMPSSSQA DTAFFVAVGM DRSTILEPSR RQMWLELAAL ALVAFLGGWM
AWVLGSRAIV KPSADILEAT RQLQQGRLDV RIPTQSVHAS QELMQIAVGF NRMAESVQAH
QAALESELAS SQAARERLKD AQSLARIGYW QIDLATQQIS WSDEVYELFD IDRTQLDGTY
QSFLNWIHPS DREAFTVVRD AAVRAGTALD CEFRVIAPGG RICWIHQFGR VHFNPDGRAS
TQRTGVIQDI TQRKLAEQAL IDSEQRYAEL LEMVPLPMWV YDSATTRFLA VNQAAVQAYG
YSAAEFLSMT IFDIRPEAEH AYLRQWLDNP LRKKALWHDL RKDASLFSVE TVSQPIQYVG
RAARLVIAMD KTAQDKAEKE TQDYLFTLQR AADAAQAITW HQTLEGTMQE IADQARGVIG
THQAVVSLSV DGNPLQMTHA LSLSEKYEPY RSLIKPADGS DIQAVVSESN RLMRMTQAEL
EAHPRWPGFG GHGGKHPPMR GWLAVPLIGK NGKNIGLLQL SDKYEGEFTK QDEYVALELS
HLASAGLENS RLLEEISQLN AGLEQKVAER TVALARQEAL FRALAEQAPQ LVWTASPDGE
ATYFNRAWFD LMGGKLEDWT GLQWLAVIHP DDVSDIQASW KIARASQSSY AGVRRLLAED
GSCHTMAYRG SPVLDEQGKV AFWVGIDADI TEIKAIEAAL RLSNQELEAF SYSVSHDLRS
PLNTIDGFSR LLAKQLAQQL EGEADAKVTH YLARIQAGVA QMGQLIEDLL SLSQVTRASL
HTERVDLSFM ARSLLDEWQT RQPERQVTVT VESGLQAQGD RPLVRIVMEN LLANAWKFTS
QTAQANISVG QTFDAAGLPV FFVRDNGAGF DMAYSDKLFD PFQRLHAASE FSGTGIGLAT
VSRVIKRHGG RIWAESAPAC GATFFFTLPQ GEAYDAS
|
|---|
| |