Gene Pnap_0337 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_0337 
SymbolrpsE 
ID4688726 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp337339 
End bp337857 
Gene Length519 bp 
Protein Length172 aa 
Translation table11 
GC content56% 
IMG OID639833329 
Product30S ribosomal protein S5 
Protein accessionYP_980581 
Protein GI121603252 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0098] Ribosomal protein S5 
TIGRFAM ID[TIGR01021] ribosomal protein S5, bacterial/organelle type 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0478966 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00120208 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCTAAGT TTCAAGCTAA ATCGCAAAAC GACGCTCCAG ACGATGGTCT GAAGGAAAAA 
ATGATCGCGA TCAACCGCGT GACCAAAGTG GTGAAGGGCG GCCGTATTCT CGGTTTTGCC
GCACTCACCG TGGTCGGTGA CGGTGATGGT CGCGTTGGCA TGGGCAAGGG CAAGTCGAAA
GAAGTGCCTG CAGCCGTGCA AAAGGCCATG GAAGAAGCGC GCCGCAACAT GACCAAGGTG
TCATTGAAAA ACGGCACGCT GCACCACAAT GTGTTCGGTC ACCACGGTGC AGCCAACGTC
ATGATGGCGC CGGCTCCCAA GGGTACCGGC ATCATTGCTG GCGGTCCGAT GCGCGCAGTG
TTCGAAGTCA TGGGCATCAC CGACATCGTG GCCAAAAGCC ATGGTTCGAG CAACCCGTAC
AACATGGTGC GCGCCACCAT GGATGCACTG AAAAATTCCA CCACGGCTTC CGATATCGCG
GCCAAGCGTG GCAAATCAGT CGAAGAAATC TTCGGCTAA
 
Protein sequence
MAKFQAKSQN DAPDDGLKEK MIAINRVTKV VKGGRILGFA ALTVVGDGDG RVGMGKGKSK 
EVPAAVQKAM EEARRNMTKV SLKNGTLHHN VFGHHGAANV MMAPAPKGTG IIAGGPMRAV
FEVMGITDIV AKSHGSSNPY NMVRATMDAL KNSTTASDIA AKRGKSVEEI FG