Gene Pnap_0335 details

Gene Information

• Locus tag: Pnap_0335
• Symbol: rplF
• ID: 4688170
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Polaromonas naphthalenivorans CJ2
• Kingdom: Bacteria
• Replicon accession: NC_008781
• Strand: +
• Start bp: 336411
• End bp: 336944
• Gene Length: 534 bp
• Protein Length: 177 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 639833327
• Product: 50S ribosomal protein L6
• Protein accession: YP_980579
• Protein GI: 121603250
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0097] Ribosomal protein L6P/L9E
• TIGRFAM ID: [TIGR03654] ribosomal protein L6, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 0.000198862
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: 8
• Fosmid unclonability p-value: 0.000458858
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGTCTCGTG TAGCAAAAAT GCCGGTCGCC ATACCCGAAG GTGTGGAAAT CGCAATCAAA 
GACACCCAGA TCAATGTCAA GGGCGCCTTG GGCGCCTTGG CACTGGCACA GAACGCCCAT 
GTTGTTATCG CAAGTAACGA CGGCAAGCTG ACTTTTGTAC CAGCCAATGA TTCCCGCCAA 
GCCAATGCCA TGAGCGGCAC GATGCGTCAG CTCGTGAACA ACATGGTGGT CGGTGTCACC 
AAGGGTTTTC AGAAAAAGCT GAACCTGGTC GGCGTGGGTT TCAAGGCCCA GGCTCAAGGT 
GACAAGCTGA ACCTCACAGT GGGCTATTCC CACCCTGTGG TGATGGCCAT GCCTGCGGGC 
ATCACGGTTG CAACCCCAAC GCCCACCGAA GTGGTCATCA AGGGTTCTGA TCGCCAACGT 
GTAGGCCAGA TTGCCGCTGA AGTGCGTGCA GTTCGTCCTC CCGAGCCTTA CAAAGGCAAG 
GGCATCCGTT ATTCGGATGA AAAAATCACG ATCAAAGAAA CCAAGAAGAA ATAA 

 

Protein sequence

MSRVAKMPVA IPEGVEIAIK DTQINVKGAL GALALAQNAH VVIASNDGKL TFVPANDSRQ 
ANAMSGTMRQ LVNNMVVGVT KGFQKKLNLV GVGFKAQAQG DKLNLTVGYS HPVVMAMPAG 
ITVATPTPTE VVIKGSDRQR VGQIAAEVRA VRPPEPYKGK GIRYSDEKIT IKETKKK