| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0281 |
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| Symbol | |
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| ID | 4687449 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 281293 |
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| End bp | 283803 |
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| Gene Length | 2511 bp |
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| Protein Length | 836 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 639833274 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_980526 |
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| Protein GI | 121603197 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0813035 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGCCCG GCTTCATCCC TGGCCGTCCA GCCCTGACCG GAGGCCAGGT GCCGACCGCC
TTGCAGCAAG CCGGCCATCG CCTGGCCATG ACCGAGCGTA TTGCGCATAT CGGCAGCTGG
GCGCTGGACC TGCCAGCGCT GCAACTGCTC ACGTATTCCA GCGAATTCGC CGCCATCCTG
GGCCTGCCGG CCGATGCCCC GCTCACATGG GATGAACTGG CCGACAGGTT CGCGCCCGAG
TACCGCAAAC GCATCGCAGC GCTGCTGCAG CAGTGCGCCA GCCATGGCAC TGCTTTTGAC
GAAGAAATGC AGATCGACAC CCCGCTCTGC CGCAAATGGG TTCGCATGGC CTGTGAAGCC
GTGCAAAACA AGCGCGGCCA GATCAAAAGC CTGCAGGGCG TGCTGCAGGA CATCTCGACC
CAGAAACATG CCCAGCAGGA GACGCTTCAC CTGGCCATGC GGCTGACCAC CACGCTGGCC
AGCATCACCG AAGCCTTTGT CACCCTGGAC CGCCAGTGCT GCTTTACCTA CCTCAACCAG
AAAAGTGAAC AGCTGCTGCG GCACACCACC GGCGAGCTGC TGGGCAAGGA AATCTGGCTG
GTCCTGGTCA CCGACAAGAA CCAGCGCCTG CGCCAGGAAC TGCAGCGCTC CATTGCCACC
AACCGGCAGC TTGAATTCGA GGATTTTTAC CCCGGCCTGG GCAAATGGCT CGAAGTGCGC
GCCTATCCCT TCGCCGAAGG CCTGGCGGTG TACTTTCGCG ATGTGAGCAA GCGGCGCAAG
TCGCAGGAGC AGCTGATGCT GCTGGAAACC TGCATCTCAC GGCTCAACGA CATCGTGCTC
ATCGCCGAGG CCCAGTCTGG ATCGCCAAAA GTGCCCTATA TCGTGTTCGT CAACCAGGCC
TTTGAGGAGC ACACCGGCTA CAGCGGCCAT GAAGTGCTGG GCCAGACGCC GCGCAAGCTT
TTTGGCCCCG GAGCCGTGCA GGACGAATTG CAGGGCATGA CCAAAATGCT GCTGCGCAAG
CGGCATGCGC GCAGCGAGCT GCTGATCTAC CGCAAGAACG GCAGCTGCTT CTGGCTCGAA
CTGGAGATCG TCCAGGTGGC GGTGACGGCG GACGAACTCA CCCACTGGGT CGCCGTGGGG
CGCGACATCA CCCAGCGCAA GGTCAACGCC GACGCCATTC ACCAGCTGGC CTTTTATGAC
CCGCTGACAA CCCTGCCCAA CCGGCTGATG CTGCTGAACC GGCTGGAGCA GGTGATGGCC
CAAAGCGCCC ACCCGCGGCG CCAGGGTGCC CTGATGTTCA TCGACGTGGA CAAGCTCAAG
GTCCTGAACG ACACCCTGGG CCACCACAAG GGCGACCTGC TGCTGCAGCA GGTCGCCGAA
CGGCTGGCAG GCTGTGTCGA GGACACCGAC ATGGTGGCGC GTCTGGGCGG CGATGAATTT
GTCGTGCTGC TGGAAAACCT GGGCGACGAT GCAGGCAGCG CCGCCGCGCA TGCCCGGCAA
CTGGCTGAAA AGGTGCTGGA GCAATTGCGC GAACCGTTTG ACCTGGGCGG ACACCAGCAC
TACACCACCT CCAGCATCGG CGTGACCTCG CTCAATGCCG CCCATGGCAG CGTCAGCGAA
GTGCTCAAGC AGGCCGACTT GGCGATGTAC CAGGCCAAGA CCACGGGCCG CAACGCGCTG
TGCTTTTTTG ACCCCGAGAT GCAGGCCGCC GTCAATGCGA ACGCCGCCGT CAGTTCCGAG
CTGCATATCG CGCTGAGAAA GCAGGAGTTT GTCCTTCATT ACCAGCCCCA GGTGGACAGC
CAGGGGCGCG TGAACGGCGT CGAGGCCCTG CTGCGCTGGC ACCATCCCAA GCGCGGGCTG
GTCATGCCGA CCGACTTCAT TCCGATGGCC GAGGAAACCG GGCTGATCTT GCCGCTGGGC
CGATGGGCGC TGGCCACCGC CTGCGAACAG CTGGCGGCCT GGGCAGCGTG GCCGCAGGCC
GCCGATTTGA GCATTGCGGT GAATGTCAGC GTGCGCCAGT TCCGGCATCC AGATTTCGTG
GACCAGGTGA TGGCCGAGAT CCGGCGCACC GGCATCAAGC CGCAGCACCT CAAGCTCGAA
CTCACCGAAA CCCTGCTGGC CGACGGCATG GACGTCACGC TGGCCCGGAT GGGCACGCTC
AAGGCGCTGG GCGTGACGCT GGCGCTTGAC GATTTCGGCA TGGGCTACTC GTCGCTGTCC
TTGCTCAAGC GCCTGCCGCT GGACCAGCTC AAGATCGACA AGAGCTTTGT CGCCGAAGTG
CTGACCGACC CGGCCGATGC CGCCATTTCC CGCACCATCA TCACCCTGGC CCACAGCCTG
AACCTGAAAG TGGTGGCCGA GGGCGTGGAA ACCCAGGCCC AGCAGGACTT CCTGGTTGCT
GAGGGCTGCG ACCAGTTCCA GGGCTTTTTG TTTTCAGCGC CGCTGCCGAT TGAAGCGCTG
GAGGCCTACC TGATGGCGCA GAGCCCGCCG CTGAAGCTTC AAACGGCCTA G
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| Protein sequence | MPPGFIPGRP ALTGGQVPTA LQQAGHRLAM TERIAHIGSW ALDLPALQLL TYSSEFAAIL
GLPADAPLTW DELADRFAPE YRKRIAALLQ QCASHGTAFD EEMQIDTPLC RKWVRMACEA
VQNKRGQIKS LQGVLQDIST QKHAQQETLH LAMRLTTTLA SITEAFVTLD RQCCFTYLNQ
KSEQLLRHTT GELLGKEIWL VLVTDKNQRL RQELQRSIAT NRQLEFEDFY PGLGKWLEVR
AYPFAEGLAV YFRDVSKRRK SQEQLMLLET CISRLNDIVL IAEAQSGSPK VPYIVFVNQA
FEEHTGYSGH EVLGQTPRKL FGPGAVQDEL QGMTKMLLRK RHARSELLIY RKNGSCFWLE
LEIVQVAVTA DELTHWVAVG RDITQRKVNA DAIHQLAFYD PLTTLPNRLM LLNRLEQVMA
QSAHPRRQGA LMFIDVDKLK VLNDTLGHHK GDLLLQQVAE RLAGCVEDTD MVARLGGDEF
VVLLENLGDD AGSAAAHARQ LAEKVLEQLR EPFDLGGHQH YTTSSIGVTS LNAAHGSVSE
VLKQADLAMY QAKTTGRNAL CFFDPEMQAA VNANAAVSSE LHIALRKQEF VLHYQPQVDS
QGRVNGVEAL LRWHHPKRGL VMPTDFIPMA EETGLILPLG RWALATACEQ LAAWAAWPQA
ADLSIAVNVS VRQFRHPDFV DQVMAEIRRT GIKPQHLKLE LTETLLADGM DVTLARMGTL
KALGVTLALD DFGMGYSSLS LLKRLPLDQL KIDKSFVAEV LTDPADAAIS RTIITLAHSL
NLKVVAEGVE TQAQQDFLVA EGCDQFQGFL FSAPLPIEAL EAYLMAQSPP LKLQTA
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