| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0258 |
|---|
| Symbol | |
|---|
| ID | 4686294 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 260180 |
|---|
| End bp | 261112 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639833251 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_980504 |
|---|
| Protein GI | 121603175 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1512] Beta-propeller domains of methanol dehydrogenase type |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.734577 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTTTGC GTATCTTCTT GCAGGCACTG TTACTGGCGG TATGGCTACC CTTGGCCAGC
GTCGCGGCCT GGGCGCAAGG CGTTCAGCCC GTCCCGCCGC TGACCGCGCA TGTGATGGAC
AGCACCGGCA CGCTGACGGC GGCGCAAAAG GCCGCGCTGG AAGCCAGGCT GACGGCCTTC
GAGCAGTCGC GCGGCGCCCA GGTGGTCGTG CTGATGGTGC CGACCACCCA ACCCGAGGAC
ATTGCCGCGT ATGCGCAGCG CATCGGCGAC AGCTGGAAAA TCGGCCGCAA GAGCATTGGC
GACGGCCTGC TGCTGGTGGT GGCCAAGAAC GACCGCGCCG TTCGCATTGA AACCACCAAG
GCGCTCGAAG GCGCCATTCC CGACCTGGCG GCAAGCCAGA TCATAGAGAC CGCGATCACG
CCGCGCTTCA AGCAGGGCGA CTTTGCCGGC GGACTGGACG CCGGCGCCAG CCAGATCATG
GCGCGCATCA CCGGCGAAAA CCTGCCGGCG CCGCAGCAGG GACAAACCCA TCGCGGCAGC
GGCGGCGGAT TCGACTGGAC GACGCTGGCG GTGTTCCTGT TTTTTGCCGT GCCCATCGGC
GGCCGGGTGC TGTCAAGTGT GCTGGGCCGC AAGCTGGGCT CGGTGGCAAC TGGCGGCGCG
GTGGGCGTGC TGGCCTGGGT GTTCACCAGC AGCCTGGTCA TCGGCGCCAT TGCCGCAGTG
GTCGGCATGG TGTTCGCGCT GATCTCCGGC ATCAGCGGCT TGGGCGGCAT GGGCCGTGGC
GGTCGCTCGT CAGGCTGGGG CGGCCCCGGA GGCTTCGGCG GTGGTGGTTT TGGTGGCGGC
AGTTTTGGTG GCAGTCGTGG CGGCGGCGGG GGTGGCTTCA GCAGCGGCGG CGGCGGCAAT
TTCGGTGGCG GCGGCGCATC GGGCAACTGG TAA
|
|---|
| Protein sequence | MTLRIFLQAL LLAVWLPLAS VAAWAQGVQP VPPLTAHVMD STGTLTAAQK AALEARLTAF
EQSRGAQVVV LMVPTTQPED IAAYAQRIGD SWKIGRKSIG DGLLLVVAKN DRAVRIETTK
ALEGAIPDLA ASQIIETAIT PRFKQGDFAG GLDAGASQIM ARITGENLPA PQQGQTHRGS
GGGFDWTTLA VFLFFAVPIG GRVLSSVLGR KLGSVATGGA VGVLAWVFTS SLVIGAIAAV
VGMVFALISG ISGLGGMGRG GRSSGWGGPG GFGGGGFGGG SFGGSRGGGG GGFSSGGGGN
FGGGGASGNW
|
|---|
| |