Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_0227 |
Symbol | |
ID | 4687472 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | + |
Start bp | 233340 |
End bp | 234614 |
Gene Length | 1275 bp |
Protein Length | 424 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 639833220 |
Product | extracellular solute-binding protein |
Protein accession | YP_980473 |
Protein GI | 121603144 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.998322 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.257108 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCAGA AATATTCGGG ATTTATGGCT GCGCTGACAG CAACACTCGC CACCGCCATG CCGGTGCAGG CTCAGACCAT GGTGACGATG TGGGTGCATG CCGGGCCAGG CCCTGAGGCG GTTGCCTACT CCGCAGCGAC AGATGCCTTC AACGCGCAGA ACAAGGACAT CAAGCTTGAC CTCGTGAAGT TGCCCGAAGG CAGCTACAGC AACCAGGTGA GTGCTGCTGC ACTTGCCCGC AAGCTGCCCT GCCTGTTGGA CTTCGATGGT CCTAACGTCT ACAACTACGC ATGGACGAAG AAGATCATCC CGCTGGACAC TTTTCCGGAG TTGGTCGCGG TAAAAGCAGA CCTGCTTCCA TCGCTGCTTC GCCAGGGAAC TTACGGCGGA AAACTCTACA GCTTGGGCCA GTTTGACTCA GGTCTGGGAA TCTGGGGCAA CAAAAAGCTG CTCGAAAAGG CGGGGGTGCG TATCCCTGGC TCTGTGCTCG AGGCGTGGAC GCTCGCCGAG TTCGAGGACG CGCTGAAGAA GCTCAAAAGC AGCGGTGTGG CCGCTCCGTT GGACATGAAG TTCAACTATG GCGTCGGAGA GTGGTTCACC TATGGTTTCT CGCCAATCGT GCAGAGCTTT GGCGCAGACC TGATCGACCG CAAGACATTT AAATCCTCCA AGGGAGTGAT CAATGGCGAT GCCGCGGTGA AAGCGCTGAC CACGCTGCAG GGCTGGGTCA AGGCGGGTTA CGTGAATCCT GCCACCAAGG ATGACGGCGA CTTTATCAAG GGCAAGGCGG CGCTGTCCTA TGTGGGCCAC TGGACCTTCA AGGACTACAA GAAGGCGCTC GGTGATGATC TGGTGCTGAT TCCCATGCCG GCCTTCGGCG CCAAGCCGGT GACTGGCGCT GGCTCATGGA ACTTCGGCAT CTCGGCCGAC TGCAAGGATC CGAAGGCGGC AGCCAAGGTG CTGGCCCATC TGATGTCAAC CCCGGAGATC CTGCGCGTGA CCGAGGCAAA TGGTGCAATG CCTGGAACCA ATTCAGCGCT GGCCCAGAGC AGGGACTACG GTGTCAAGGG CGGCTTGAAC ATTTATGTAC AGCAGGTTCG CCAGGGAGTG GCGCTGGTAC GCCCTGAAAC GCCGGCTTAT CCGGCCATCA GCACGGCCTT TGCCGAGGCG TTAAACAACA TTGTGGCGGG CGCTGACGTC CAAAAGGAGC TCGACCGCGC CTCCAAAAAG ATCGACCAGA ACATAGAGGA CAACAAGGGT TACCCGATCA AGTGA
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Protein sequence | MKQKYSGFMA ALTATLATAM PVQAQTMVTM WVHAGPGPEA VAYSAATDAF NAQNKDIKLD LVKLPEGSYS NQVSAAALAR KLPCLLDFDG PNVYNYAWTK KIIPLDTFPE LVAVKADLLP SLLRQGTYGG KLYSLGQFDS GLGIWGNKKL LEKAGVRIPG SVLEAWTLAE FEDALKKLKS SGVAAPLDMK FNYGVGEWFT YGFSPIVQSF GADLIDRKTF KSSKGVINGD AAVKALTTLQ GWVKAGYVNP ATKDDGDFIK GKAALSYVGH WTFKDYKKAL GDDLVLIPMP AFGAKPVTGA GSWNFGISAD CKDPKAAAKV LAHLMSTPEI LRVTEANGAM PGTNSALAQS RDYGVKGGLN IYVQQVRQGV ALVRPETPAY PAISTAFAEA LNNIVAGADV QKELDRASKK IDQNIEDNKG YPIK
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