| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0220 |
|---|
| Symbol | |
|---|
| ID | 4686546 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 225345 |
|---|
| End bp | 225941 |
|---|
| Gene Length | 597 bp |
|---|
| Protein Length | 198 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 639833213 |
|---|
| Product | OmpW family protein |
|---|
| Protein accession | YP_980466 |
|---|
| Protein GI | 121603137 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3047] Outer membrane protein W |
|---|
| TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.221002 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAC AACTCATCGC CGCCGCCGTT CTGTCCACCC TGTTGTCGGG CGCGGCCTTT
GCACAGCAAG CCACGGAAGG CCCGTGGATG GTGCGTGCCC GCGCCGTGCA TCTGGACAGC
GCGAACGGTG ACAGCACCGG CCTGGGCCTG TCGGTGAACA ACAAGTGGAT GCCCGAAGTG
GACATCAGCT ATTTCGTGAA CAAGAACGTG GCGGTCGAGC TGGTCCTGAC GGTGCCGCAA
AAGCACACCA TGTACTCCAA CGGTGTGGAA ATCGGCACGC TCAAGCACCT GCCGCCCACG
CTGCTGGGCC AGTACCACTT TGACATGAAC GGCTTCAAGC CCTATGTCGG CGCAGGCGTC
AACTTCACGC GTTTTTCCGG TGTCAACCTG CTGGGCGGCG TGGCCACTGT GGACAAGAAC
AGCTGGGGTC CGGCACTGCA GGTGGGCGTG GACATTCCAC TCAGCAAGGG CCTGTACCTC
AATCTGGACG TGAAAAAGGT CTATATCCGC ACCGACGTGG CGGCTGCTGG CACCAAGATT
GGCGAATTCA AGGTCGATCC CCTGCTGGTC GGCGTGGGTC TGGGCTGGCG CTTCTAA
|
|---|
| Protein sequence | MKKQLIAAAV LSTLLSGAAF AQQATEGPWM VRARAVHLDS ANGDSTGLGL SVNNKWMPEV
DISYFVNKNV AVELVLTVPQ KHTMYSNGVE IGTLKHLPPT LLGQYHFDMN GFKPYVGAGV
NFTRFSGVNL LGGVATVDKN SWGPALQVGV DIPLSKGLYL NLDVKKVYIR TDVAAAGTKI
GEFKVDPLLV GVGLGWRF
|
|---|
| |