Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_0197 |
Symbol | |
ID | 4686724 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | + |
Start bp | 208232 |
End bp | 209440 |
Gene Length | 1209 bp |
Protein Length | 402 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 639833190 |
Product | Serine-type D-Ala-D-Ala carboxypeptidase |
Protein accession | YP_980443 |
Protein GI | 121603114 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1686] D-alanyl-D-alanine carboxypeptidase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00107938 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.937465 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCAATGCT TCCTCAAGGC CCCCGCCGGC CTGCGCGGCC TCGCCGCCAC TTTCGTCCTG CTTGTCTCGG TGGCGCTTCC CGCCGCGCAT GCCCAGGCAC CGCAGGTGCC TGAAATCGCC GCACGCTCCT ATCTGCTGCT CGACGTCACG GCCAACCAGA TCCTGGCCGC CAAGGACATC GATTCTCCGG TCGAGCCGGC GTCGCTGACC AAGCTGATGA CCGAATACCT GGTGTTCGAT GCGCTCAAGT CCAAGAAGAT CACGCTCCAG CAGACCTTCG GCGTCAGCCA GCGCGCCTGG AAAATGCCGG GTTCGCGCAT GTTCATCGAC CCGAAAATGC AGGTTCCGGT CGAAGACTTG ATCAAGGGCA TGATCGTGCA GTCGGGCAAC GACGCCACCA TGGCGCTGGC CGAGGGCGTG GGCGGAACGG CCGAGCATTT CGTGGAGCTG ATGAACCAGC AGGCCAAGGC GCTGGGCATG AAATCGACCA GCTACAAAAA CCCCGAAGGC CTGACCGAAG CCGGCCACAT CACCACGGCG CGCGACCTGA GCATTTTGTC CACCCGCCTG ATGAGCGACT TCCCTGATTA CATCGGCTAC TCGGCCATCA AGAAGTACCG CTACCCCGGC ACGCCAGCCA CCAACGACAC CAACCGCAAC ACGCTGCTGT TTCGCGACCC GACGGTCGAT GGCCTGAAAA CCGGCCACAC CAACGCTGCC GGCTATTGCA TGATTGCCAC GGCCAAGCGC GAATTTCCCA ATCTGGGCGC AGCCGGCAAG CCCGGCGGCA GGCGCCTGCT GGCCATCGTG CTGGGAACCA CCAGCGACAG CGCCCGCGCG ACCGAGTCGC AAAAACTGCT GAACTGGGGT TACACCGCCT TCGAAGCGGT CAAGCTGTTC GATGCCGGCC AGGCGGTGGT GACGCCTGCG GTCTGGAAAG GCAAGGACGC GGTCGTCAAG CTGGGTCGTC CCGAAGCGAT CGTGGTGGCT GTGACGGCCG GCAGCGCCTC CAGGCTCAAA ACCCAGGTGG CCCGGCCCGA GCCGCTGGTC GCGCCCTTCA AGAAGGGCCA GCCGGTGGGC AGCCTGAAGA TCATGCTGGG CGACAACCCC GCGCCCATGG CCGAAGTGCC GCTGGTGGCG CTGGAAACCG TCGAAGAAGC CGGCATCATG GGCCGCGCCT GGGATTCGAT CCGGCTGTGG ATCAAGTAA
|
Protein sequence | MQCFLKAPAG LRGLAATFVL LVSVALPAAH AQAPQVPEIA ARSYLLLDVT ANQILAAKDI DSPVEPASLT KLMTEYLVFD ALKSKKITLQ QTFGVSQRAW KMPGSRMFID PKMQVPVEDL IKGMIVQSGN DATMALAEGV GGTAEHFVEL MNQQAKALGM KSTSYKNPEG LTEAGHITTA RDLSILSTRL MSDFPDYIGY SAIKKYRYPG TPATNDTNRN TLLFRDPTVD GLKTGHTNAA GYCMIATAKR EFPNLGAAGK PGGRRLLAIV LGTTSDSARA TESQKLLNWG YTAFEAVKLF DAGQAVVTPA VWKGKDAVVK LGRPEAIVVA VTAGSASRLK TQVARPEPLV APFKKGQPVG SLKIMLGDNP APMAEVPLVA LETVEEAGIM GRAWDSIRLW IK
|
| |