| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0194 |
|---|
| Symbol | |
|---|
| ID | 4687790 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 205816 |
|---|
| End bp | 207012 |
|---|
| Gene Length | 1197 bp |
|---|
| Protein Length | 398 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639833187 |
|---|
| Product | VanZ family protein |
|---|
| Protein accession | YP_980440 |
|---|
| Protein GI | 121603111 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5652] Predicted integral membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0242473 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCGCC CCCTGCAAGG GGGGGCGGAA CTACACGCAG CGAAGCGCAG TGAGGACGTC
GGGGGTGTGC CATATTCCTC CGTCGGGGAT GGGCAAAAGA CCACCGCCTG GCCGCTGGCC
CTGGTGCTGG TGTGCCTGAT CATTTATGCC AGCCTTTATC CGTTTTCGGA GTGGCGCAAC
CAGGGCATTT CGCCGCTGCG TTTCCTGACC TCGCCCTTGC CCAAATACTG GACCGGTTTT
GATGTCGGCA CCAATTTGCT GGGTTATGCG CCGCTGGGCT TTTTGCTGGC CCTGTCGGCG
CTGCGCAGCC GGCGCGTCGC CTGGGCGGTC AGCGTGTCGG TTCTTGGCGC TGCACTGCTG
TCGCTGGCGA TGGAATCGCT GCAGAGTTAT TTGCCGTCGC GCATTCCTTC GAATGTCGAT
CTGGCGCTGA ACACGCTGGG CGCCTGGCTG GGCGCCTGCT GCGCCCTGGC GCTGGAGCGA
TCCGGGCTGG TGGGCCGCTG GGGCCGCGTG AGGGCGCGCT GGTTTTCGCC CGATGCGCGC
AGCGTGCTGG TGCTGCTGCT GCTGTGGCCG CTGGCCTTGC TGTTTCCGGC TGCGGTGCCG
ATGGGCCTGG GCCAGGTGTT CGAGCGGCTG GAGACGGCGC TGGCCGATGC GCTGGCCGAC
ACGCCTTTCC TGGAGTGGAT GCCGATGCGC GAGGTCGAAC TCCAGCCCCT GGTGCCCATC
GCCGAGCTGG TCTGCGTGGC GCTGGGCGTG CTGATTCCCT GCCTGCTCGG CTATTGCGTG
GTCCGCACGC TGTGGCAGCG CGCGGTGTTT GCCGCCGCGA CGATTGCGCT CGGCCTGGGC
GCGTCGGCCC TGTCGGCGGC GCTCAGCTAC GGGCCGGAAC ACGCCTGGGC CTGGCTCGAT
GCGCCGGTGC GGGTCGGCAT CGGACTGGCC GTGGTACTGG CCGTGCTGCT GCTGGCCTTG
CCGCGCCGCG TTGCCGCCGC GCTGGCGCTG CTGGCGCTGG CCATTCACCT GAGCCTGCTC
AACCAGGCGC CCGCCGACCC TTACTTTGCC CAGACACTGC AAATCTGGGA GCAGGGCCGG
TTCATCCATT TCTATGGCCT GGTGCAGTGG CTGGGCTGGC TCTGGCCGTA TGCGGCATTG
ACCTGCCTGG TGGCAAGGCT TTCCAGCCAC GAACCGCAAG CAGCCGCTGA AAAGTAA
|
|---|
| Protein sequence | MSRPLQGGAE LHAAKRSEDV GGVPYSSVGD GQKTTAWPLA LVLVCLIIYA SLYPFSEWRN
QGISPLRFLT SPLPKYWTGF DVGTNLLGYA PLGFLLALSA LRSRRVAWAV SVSVLGAALL
SLAMESLQSY LPSRIPSNVD LALNTLGAWL GACCALALER SGLVGRWGRV RARWFSPDAR
SVLVLLLLWP LALLFPAAVP MGLGQVFERL ETALADALAD TPFLEWMPMR EVELQPLVPI
AELVCVALGV LIPCLLGYCV VRTLWQRAVF AAATIALGLG ASALSAALSY GPEHAWAWLD
APVRVGIGLA VVLAVLLLAL PRRVAAALAL LALAIHLSLL NQAPADPYFA QTLQIWEQGR
FIHFYGLVQW LGWLWPYAAL TCLVARLSSH EPQAAAEK
|
|---|
| |