| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0180 |
|---|
| Symbol | |
|---|
| ID | 4689116 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 192546 |
|---|
| End bp | 194282 |
|---|
| Gene Length | 1737 bp |
|---|
| Protein Length | 578 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639833173 |
|---|
| Product | glucose-methanol-choline oxidoreductase |
|---|
| Protein accession | YP_980426 |
|---|
| Protein GI | 121603097 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAGC ACCGCTTCGA CTACATCATC ATCGGCGCCG GCACGGCCGG CTGCCTGCTG
GCCAACCGGC TGAGCGCCGA CGCCTCCAAG CGCGTGCTGC TGATCGAGGC CGGCCGCAAG
GACGATTACC ACTGGGTGCA TATTCCGGTC GGCTACCTGT ACTGCATCGG CAACCCGCGC
ACCGACTGGC TGTTTACCAC CGAGCCCGAC GCGGGCCTGA ACGGCCGGTC GCTGCGCTAT
CCGCGCGGCA GGGTGCTGGG CGGCTGCTCC AGCATCAACG GCATGATCTA CATGCGCGGC
CAGGCACGCG ACTACGACCA GTGGGCGCAG CTGACCGGCG ACAGCGCCTG GACCTGGGAC
AACGCCCTGC CCCATTTCAA GCTGCACGAA GACCATTACA AAGGCGCTGA CGCGCTGCAC
GGCGCGCGCG GCGTGGCACC CGAGTTGATG CAGGACAAGA CCAATCCGTA CCAGAAAATC
CTGCGCCACC GCAACGCGGG CGGCGAATGG CGGGTGGAAA AGCAGCGCCT GCGCTGGGAC
ATCCTCGATG CGTTCGCCGA GGCGGCCAGC CAAGCGGGGA TTCCGGCCAC GCCCGACTTC
AACCGGGGCA GCAACGAAGG CGTGGGCTAT TTCGAGGTCA ACCAGAAAAA CGGCTGGCGC
TGGAACACCG CCAAGGCCTT CCTGCGGCCG ACCTGCCTGG GCCGGCCGAA CTTTGAACTC
TGGACGAACG CGCAAGTCAG CAAGCTGGTG ATCGAGCCGC AGCCAGACGG CAGCCAGCGC
TGCACCGGCG CCGAGGTCTG GACCGGCCAG GAGCGGGTCA CGGCGCTGGC CACGCGCGAC
TCGGGGCACA TGGGCGAGGT GCTGCTGTGC GCCGGCAGCA TCGGCTCGCC GCACCTGCTG
CAGCTCTCGG GCATCGGCCC GGCCGGCTTG CTGCGGCAGC ACGGCATTGC CGTGGTGCAG
GACCTGCCGG GCGTGGGCGC CAATTTGCAG GACCACCTGC AGATCCGCTC GGTGTACAAG
ATTCAGGGTG AACAAGGCCG CCGGCGCTGG GGCCTGTCGC TCAACACCAT GGCCGATTCG
CTCTGGGGCA AGGCGCGCAT CGGGCTCGAA TACGCGCTGC GCCGCACCGG CCCGATGAGC
ATGGCGCCGT CGCAGCTCGG CGCCTTCACG CGCAGTTCGC CCGACCAACC GTATCCCAAT
ATCGAGTACC ACGTCCAGCC GCTGTCGCTT GACGCCTTTG GCGAGCCGCT GCACCGCTTC
AATGCCTTCA CCGCCAGCGT CTGCAACCTG AACCCGACCA GCCGGGGCAG CGTTCGCCTG
AAGACCGGCC GCTTTGAAGA CGCGCCGGCG ATTGCACCCA ACTACCTGAG CACGCCAGAG
GACCGGCAGG TGGCCGCCGA TTCGCTGCGC ATCACGCGCA AGATCGTCAG CCAGGGCGCG
CTGGCCAAAT ACCAGCCCGA GGAATTCAAG CCGGGCGTGC AGTTCCAGAC CGACGAAGAC
CTGGCACGGC TGGCCGGCGA CATCGCCACG ACCATCTTCC ATCCGGTCGG CACCACGAAA
ATGGGCCGCG CCGACGACCC GATGGCGGTG GTCGATTCGC ACCTGCGGGT GCGCGGCGTT
CGCGGGCTGC GCGTGGTCGA TGCGGGCGTC ATGCCCTTGA TCACCAGCGG CAACACCAAC
TCGCCGACCC TGATGATTGC CGAGAAGGCG GCGCAGTGGA TACAAGGCGG CGTTTGA
|
|---|
| Protein sequence | MSEHRFDYII IGAGTAGCLL ANRLSADASK RVLLIEAGRK DDYHWVHIPV GYLYCIGNPR
TDWLFTTEPD AGLNGRSLRY PRGRVLGGCS SINGMIYMRG QARDYDQWAQ LTGDSAWTWD
NALPHFKLHE DHYKGADALH GARGVAPELM QDKTNPYQKI LRHRNAGGEW RVEKQRLRWD
ILDAFAEAAS QAGIPATPDF NRGSNEGVGY FEVNQKNGWR WNTAKAFLRP TCLGRPNFEL
WTNAQVSKLV IEPQPDGSQR CTGAEVWTGQ ERVTALATRD SGHMGEVLLC AGSIGSPHLL
QLSGIGPAGL LRQHGIAVVQ DLPGVGANLQ DHLQIRSVYK IQGEQGRRRW GLSLNTMADS
LWGKARIGLE YALRRTGPMS MAPSQLGAFT RSSPDQPYPN IEYHVQPLSL DAFGEPLHRF
NAFTASVCNL NPTSRGSVRL KTGRFEDAPA IAPNYLSTPE DRQVAADSLR ITRKIVSQGA
LAKYQPEEFK PGVQFQTDED LARLAGDIAT TIFHPVGTTK MGRADDPMAV VDSHLRVRGV
RGLRVVDAGV MPLITSGNTN SPTLMIAEKA AQWIQGGV
|
|---|
| |