| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0138 |
|---|
| Symbol | |
|---|
| ID | 4687703 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 149206 |
|---|
| End bp | 150633 |
|---|
| Gene Length | 1428 bp |
|---|
| Protein Length | 475 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639833131 |
|---|
| Product | DNA repair protein RadA |
|---|
| Protein accession | YP_980384 |
|---|
| Protein GI | 121603055 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1066] Predicted ATP-dependent serine protease |
|---|
| TIGRFAM ID | [TIGR00416] DNA repair protein RadA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.822754 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCCGG GCTGCCCAAT GATGCGAAGC GGTCAATACA CTAGCCGCAT GGCCAAAGAA
AAAACGATTT ACACCTGCAC CGAATGCGGC GGCACCAGCC CCCGGTGGCT GGGCAAATGC
CCGCATTGCA CTGCCTGGAA CACACTGATC GAATCCAGCG CCGAAAACCC CGCCGCTGGA
AAAAACCGCT ACAGCCCGCA GTTCCAGTCT CTGGCCAAGG CCTGCGAAGT CACCGCGCTG
GCCGACATCG AGGCCACCGA CATGACGCGC ACCCCGACCG GCCACGAGGA ACTCGACCGG
GTGCTGGGCG GCGGCATTGT CGAAGGCGGC GTGGTGCTGA TCGGCGGCGA CCCGGGCATC
GGCAAATCGA CGCTGCTCTT GCAGGCGCTC GACTCGCTGC AGCGCGCCGG GCTGAACACG
CTGTATGTGA CCGGCGAGGA AAGCGGCGCG CAGGTCGCGC TGCGCTCGCG CCGGCTGGGG
CTGGACGGTT CGCAGGTCAA GGTGATGGCC GAAATCCAGC TCGACAAGAT TCTCGCCACG
CTGGAGGTCA CGCAGCCGGC GGTCGCCGTC ATCGACTCGA TCCAGACGGT GTATTCGGAC
CAGCTGACCT CGGCGCCCGG CTCGGTGGCG CAGGTGCGCG AATGCGCGGC GCATTTGACG
CGCGCGGCCA AGTCCAGCGG CGTGTGCATC GTGCTGGTCG GCCACGTCAC CAAGGACGGC
GCGCTGGCCG GCCCGCGCGT GCTGGAACAC ATGGTCGATA CCGTGCTGTA TTTCGAGGGC
GACACGCATT CGAGCTTTCG CCTCGTGCGC GCCATCAAGA ACCGCTTTGG CGCGGTCAAC
GAAATCGGCG TCTTCGCCAT GACCGAAAAA GGCCTGAAGG GCGTGAGCAA CCCGAGCGCG
ATGTTCCTGA GCCAGCACAG CGAGCCGGTG CCGGGCAGCT GCGTGATGGT CACGCTCGAA
GGCACGCGGC CGCTGCTGGT CGAGATCCAG GCGCTGGTCG ATGACGGCGG CCCGAACCCG
CGCCGCCTGA GCGTCGGCCT GGACCGCGAC CGGCTGGCGA TGCTGCTGGC CGTGCTGCAC
CGCCATGCGG GCGTGGCCTG CATGGACCAG GACGTGTTCG TCAACGCCGT CGGCGGCGTG
CGCATCAGCG AACCGGCGGC CGACCTGGCG GTGATGCTGG CGATTGCGTC GAGCCTGCGC
GGCAAGGCCT TGCCCAAGGG CTTTCTGGCC TTTGGCGAGG TCGGCCTGGC CGGAGAAGTG
CGGCCCGCGC CGCGCGGCCA GGAGCGGCTG AAGGAAGCGG CCAAGCTGGG TTTCAGCGTG
GCGGTGGTGC CCAAGGCCAA CGCGCCGAAA AAGCCGATTG AAGGCCTGAC CATCCACGCC
GTCGAGCGCA TCGAGCAGGC GCTGGACCTG GTGCGCAGCC TGCAGTAG
|
|---|
| Protein sequence | MQPGCPMMRS GQYTSRMAKE KTIYTCTECG GTSPRWLGKC PHCTAWNTLI ESSAENPAAG
KNRYSPQFQS LAKACEVTAL ADIEATDMTR TPTGHEELDR VLGGGIVEGG VVLIGGDPGI
GKSTLLLQAL DSLQRAGLNT LYVTGEESGA QVALRSRRLG LDGSQVKVMA EIQLDKILAT
LEVTQPAVAV IDSIQTVYSD QLTSAPGSVA QVRECAAHLT RAAKSSGVCI VLVGHVTKDG
ALAGPRVLEH MVDTVLYFEG DTHSSFRLVR AIKNRFGAVN EIGVFAMTEK GLKGVSNPSA
MFLSQHSEPV PGSCVMVTLE GTRPLLVEIQ ALVDDGGPNP RRLSVGLDRD RLAMLLAVLH
RHAGVACMDQ DVFVNAVGGV RISEPAADLA VMLAIASSLR GKALPKGFLA FGEVGLAGEV
RPAPRGQERL KEAAKLGFSV AVVPKANAPK KPIEGLTIHA VERIEQALDL VRSLQ
|
|---|
| |