| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0114 |
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| Symbol | |
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| ID | 4689464 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 122049 |
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| End bp | 123968 |
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| Gene Length | 1920 bp |
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| Protein Length | 639 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 639833107 |
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| Product | ATP-dependent DNA helicase RecQ |
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| Protein accession | YP_980360 |
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| Protein GI | 121603031 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0514] Superfamily II DNA helicase |
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| TIGRFAM ID | [TIGR00614] ATP-dependent DNA helicase, RecQ family
[TIGR01389] ATP-dependent DNA helicase RecQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.186389 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTCTGGCC CGCCCTTGTC CTCATTGCCC ATTTCTTCAG CCCCTTCAGA CCAGCCCACG
CCGCTGGACG TGCTTGGCCA GGTTTTTGGC TACTCCGACT TTCGCGGCCC GCAGCAAGCC
ATCGTCGAGC ATGTGATTGC TGGCGGCGAT GCGCTGGTCT TGATGCCCAC GGGCGGCGGC
AAGTCGCTGT GCTACCAGAT TCCGGCCATC GCCCGGCAAA ACGCCGGCCA CGGCGTGACC
ATCGTGATCT CGCCGCTGAT CGCGCTGATG CACGACCAGG TCGGCGCGCT TCTGGAAGCG
GGCGTGTCGG CGGCGTTCCT CAACTCCACC CAGACTTTCG AGGAAAGCAG CCAGCTGGAA
AAGCAGCTGC TGCGCAATGA GCTGACGCTG CTCTACGCCG CGCCCGAGCG CATCAACACG
CCGCGCATGA AGGGCCTGCT GGCGTCGCTG CACGAGCGCG GGCTGCTAAG CCTCTTTGCC
ATCGACGAGG CGCATTGCGT GAGCCAGTGG GGCCACGACT TCCGGCCCGA GTACCGCAGC
TTGAGCCTGT TGCACGAGAC CTTCCCCGAC GTGCCGCGCA TGGCGCTGAC CGCCACGGCC
GACGCGCTGA CGCGCCAGGA CATGATCGAG CGGCTCAAGC TCGAAGACGC GCGCTTGTTT
CTAAGCAGCT TTGACCGGCC CAACATCCGC TACACCATCG TCGAAAAGAC CGACGCGACG
CGCCAGCTGC TGCGCTTCAT CCAGGCCGAG CACCACGGCG AAGCGGGCAT CGTCTATTGC
CAGTCGCGCA AGCGCGTCGA GGAAATCGCC GGCATGCTCG AAGACGCGGG CATCAAGGCC
ATGGCCTACC ACGCCGGGCT CGATGCCAAG CTGCGCCAGC AGCGCCAGGA CCGTTTCCTG
CGCGAAGACG GCTGCGTGAT GGTGGCGACG ATTGCCTTCG GCATGGGCAT CGACAAGCCC
GACGTGCGCT TCGTCGCGCA CCTGGACATG CCAAAGAACA TCGAAGGCTA CTACCAGGAA
ACCGGCCGCG CCGGACGCGA CGGCTTGCCC GCTGACGCCT GGATGGTCTA TGGCCTGCAG
GACGTGGTGA ACCAGCGCCG CATGATCGAC ACCAGCGAAG TCGCCAGCGA GGAGTTCAAG
GCGGTGATGC GCGGCAAGCT GGACGCGCTC TTGACGCTGG CCGAGGGCAC GCGCTGCCGC
CGCGTCAGCC TGCTGGGCTA TTTTGGCGAG GCCAGCGAGC CGTGCGGCAA CTGCGACAAC
TGCCTGACCC CGCCGGCCGT GTGGGACGCG ACCGAGGCGG CGCGCAAGAT GCTCAGCTGC
ATCTACCGCG TGCAGCAGGC CAGCGGCATC AGCTTTGGCG CCGGGCACAT CATGGACATC
CTGCGCGGCA AGCCGACCGA AAAAGTCGTG CAGTACGGCC ATGACCAGCT CAGCACCTTC
GGCATCGGCG CCGACCTGGC CGAGCCGCAG TGGCGCGGCG TGCTGCGCCA GCTGATCGCC
AGCAACCTGG TGCGCGTCAA TGCCGAGGCC TTCAACACGC TGCAACTGAT GCCCGACGCG
CGCCAGGTGC TCAAGGGCGA AGTCAGCGTG CTGCTGCGCC AGCAGGCCGC CAGCGCCAAG
GCCGAGCGCA CGCGGCGCGG CAGCAAATCG ACGGTGAAAA CATCGGTCAA GGGCATGGCC
GAAGCGACGC TGAACGCCGG CGCGCTGGAA CGCCTTGGCC GCCTGAAAGC CTGGCGTACC
GACGTCGCCC GGGAGCACAA CCTGCCGCCA TTCGTGATCT TCCACGACGC CACGCTGCGC
GCGATTGCCG AGCAGGCGCC GCAAGACCTG CACGCGCTGA GCGGCATCAG CGGCATGGGC
GTGAAGAAGC TGGCAGCGTA TGGCGCCGAG GTGCTGCGGG TGTGCGCCGA GCCGGGGTAA
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| Protein sequence | MSGPPLSSLP ISSAPSDQPT PLDVLGQVFG YSDFRGPQQA IVEHVIAGGD ALVLMPTGGG
KSLCYQIPAI ARQNAGHGVT IVISPLIALM HDQVGALLEA GVSAAFLNST QTFEESSQLE
KQLLRNELTL LYAAPERINT PRMKGLLASL HERGLLSLFA IDEAHCVSQW GHDFRPEYRS
LSLLHETFPD VPRMALTATA DALTRQDMIE RLKLEDARLF LSSFDRPNIR YTIVEKTDAT
RQLLRFIQAE HHGEAGIVYC QSRKRVEEIA GMLEDAGIKA MAYHAGLDAK LRQQRQDRFL
REDGCVMVAT IAFGMGIDKP DVRFVAHLDM PKNIEGYYQE TGRAGRDGLP ADAWMVYGLQ
DVVNQRRMID TSEVASEEFK AVMRGKLDAL LTLAEGTRCR RVSLLGYFGE ASEPCGNCDN
CLTPPAVWDA TEAARKMLSC IYRVQQASGI SFGAGHIMDI LRGKPTEKVV QYGHDQLSTF
GIGADLAEPQ WRGVLRQLIA SNLVRVNAEA FNTLQLMPDA RQVLKGEVSV LLRQQAASAK
AERTRRGSKS TVKTSVKGMA EATLNAGALE RLGRLKAWRT DVAREHNLPP FVIFHDATLR
AIAEQAPQDL HALSGISGMG VKKLAAYGAE VLRVCAEPG
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